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Os07g0548800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF538 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.69 (0.0274) R2 : 0.751
β1 : -0.944 (0.1) R2dD : 0.0502 R2D : 0.0512
β2 : 2.38 (0.0668) R2dC : 0.69 R2C : 0.7
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.186 (0.0584) R2dN8 : 0.00738 R2N8 : 0.00213
σ : 0.515
deviance : 120.78
__
_____
C
peak time of C : 14.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.1 0.477 6.72 -0.99 1.36 -1.02 2.08 1.49 -0.24 15.3 11.44 149 -- --
108.12 0.484 6.73 -0.971 1.33 -1.03 0.902 -- -0.237 15.5 9.178 158 -- --
112.49 0.494 6.71 -1.06 1.28 -1.09 -- 1.03 -0.311 15.3 13.46 155 -- --
108.89 0.486 6.71 -0.973 1.36 -0.998 -- -- -0.228 15.2 11.68 162 -- --
126.51 0.524 6.76 -0.908 -- -1.97 -- -0.0205 -0.284 -- 7.312 245 -- --
120.26 0.514 6.69 -0.954 2.38 -- 0.379 -- -0.188 14.3 -- -- -- --
120.78 0.515 6.69 -0.944 2.38 -- -- -- -0.186 14.3 -- -- -- --
124.51 0.52 6.71 -1.03 -- -1.99 -- -- -0.261 -- 6.202 277 -- --
133.1 0.537 6.69 -- 1.39 -0.96 -- -- -0.116 15.1 10 164 -- --
455.36 0.997 6.71 -1.04 -- -- -- -- -0.244 -- -- -- -- --
144.26 0.562 6.67 -- 2.39 -- -- -- -0.0805 14.3 -- -- -- --
152.09 0.574 6.69 -- -- -2 -- -- -0.144 -- 8.236 259 -- --
484.11 1.03 6.68 -- -- -- -- -- -0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 101.46 temperature 20.0 720 > th dose independent rect. 12 10
2 102.04 radiation 20.0 270 < th dose independent rect. 15 13
5 102.98 temperature 30.0 90 < th dose dependent rect. 15 6
6 103.19 radiation 40.0 270 < th dose dependent rect. 15 13
7 103.32 temperature 30.0 90 < th dose dependent rect. 17 4
12 103.66 wind 1.0 270 > th dose independent rect. 15 13
17 103.88 wind 7.0 720 < th dose independent rect. 17 10
19 103.94 wind 5.0 720 < th dose independent rect. 17 2
20 103.97 temperature 20.0 720 > th dose independent rect. 11 6
21 104.00 wind 1.0 720 > th dose dependent rect. 21 2
22 104.01 humidity 50.0 270 > th dose independent rect. 15 13
25 104.15 wind 9.0 720 < th dose independent rect. 15 6
26 104.16 wind 1.0 720 > th dose independent rect. 15 6
28 104.19 radiation 10.0 14400 < th dose dependent rect. 22 5
30 104.27 humidity 50.0 30 > th dose dependent rect. 10 11
32 104.29 radiation 10.0 270 < th dose dependent rect. 9 10
34 104.34 wind 9.0 720 < th dose independent rect. 15 14
37 104.40 temperature 30.0 10 < th dose dependent rect. 18 3
38 104.42 humidity 70.0 90 > th dose independent rect. 15 6
47 104.58 radiation 30.0 270 < th dose dependent rect. 9 11
51 104.61 precipitation 0.1 270 < th dose independent rect. 24 11
53 104.61 precipitation 0.1 270 < th dose dependent rect. 24 11
59 104.64 wind 7.0 720 < th dose dependent rect. 17 2
63 104.75 temperature 30.0 270 < th dose independent rect. 15 5
66 104.79 temperature 20.0 720 > th dose independent rect. 6 17
70 104.85 precipitation 0.1 10 < th dose independent rect. 2 10
71 104.85 precipitation 0.1 10 < th dose dependent rect. 2 10
75 104.90 wind 9.0 4320 < th dose independent rect. 18 3
76 104.90 radiation 1.0 90 < th dose independent rect. 14 7
77 104.91 temperature 15.0 270 > th dose independent rect. 4 11
84 104.97 atmosphere 1015.0 720 < th dose independent rect. 3 6
91 105.07 humidity 70.0 90 > th dose independent rect. 11 10
92 105.08 radiation 10.0 90 < th dose dependent rect. 14 19
94 105.11 humidity 70.0 90 > th dose independent rect. 17 4
95 105.12 radiation 1.0 90 < th dose independent rect. 10 11
98 105.15 temperature 30.0 270 < th dose independent rect. 16 3
103 105.18 radiation 1.0 90 < th dose dependent rect. 14 7
121 105.26 atmosphere 1015.0 720 < th dose independent rect. 3 14
125 105.29 radiation 40.0 720 < th dose independent rect. 15 6
127 105.30 humidity 60.0 90 > th dose dependent rect. 15 6
132 105.34 precipitation 0.1 720 < th dose independent rect. 17 10
135 105.34 precipitation 0.1 720 < th dose dependent rect. 17 10
136 105.35 precipitation 0.1 720 < th dose independent rect. 15 14
137 105.35 precipitation 0.1 720 < th dose dependent rect. 15 14
140 105.37 temperature 30.0 90 < th dose dependent rect. 11 10
151 105.43 temperature 30.0 90 < th dose independent rect. 2 19
154 105.46 radiation 20.0 270 < th dose dependent rect. 14 5
168 105.52 wind 9.0 720 < th dose independent rect. 9 18
174 105.53 temperature 10.0 10 > th dose dependent rect. 12 14
177 105.55 precipitation 0.1 720 < th dose independent rect. 23 6
179 105.55 precipitation 0.1 720 < th dose dependent rect. 23 6
180 105.55 radiation 30.0 270 < th dose dependent rect. 13 7
181 105.56 wind 5.0 720 > th dose independent rect. 21 1
185 105.58 precipitation 0.1 720 < th dose independent rect. 15 6
186 105.58 precipitation 0.1 720 < th dose dependent rect. 15 6
195 105.64 wind 9.0 720 < th dose dependent rect. 17 4
202 105.66 temperature 20.0 720 > th dose independent sin 21 NA
207 105.68 temperature 10.0 720 > th dose independent rect. 15 6
208 105.68 temperature 10.0 720 > th dose independent rect. 21 18
210 105.69 temperature 30.0 270 < th dose independent rect. 24 20
222 105.76 precipitation 0.1 720 < th dose independent rect. 17 18
226 105.76 precipitation 0.1 720 < th dose dependent rect. 17 18
227 105.77 temperature 15.0 10 > th dose independent rect. 12 14
247 105.86 precipitation 0.1 720 < th dose independent rect. 5 10
248 105.86 precipitation 0.1 720 < th dose independent rect. 16 20
249 105.86 precipitation 0.1 720 < th dose dependent rect. 5 10
250 105.86 precipitation 0.1 720 < th dose dependent rect. 16 20
251 105.87 radiation 1.0 90 > th dose independent sin 23 NA
254 105.88 wind 7.0 270 < th dose independent rect. 24 11
258 105.89 wind 9.0 720 < th dose independent rect. 17 18
266 105.93 wind 9.0 720 < th dose independent rect. 3 6
267 105.93 temperature 10.0 720 > th dose independent rect. 3 6
268 105.93 humidity 50.0 720 > th dose independent rect. 3 6
269 105.93 atmosphere 995.0 720 > th dose independent rect. 3 6
270 105.93 temperature 10.0 720 > th dose independent rect. 9 18
274 105.95 atmosphere 1015.0 720 < th dose independent rect. 15 6
276 105.96 temperature 10.0 270 > th dose independent rect. 24 11
277 105.96 atmosphere 995.0 270 > th dose independent rect. 24 11
278 105.96 atmosphere 1015.0 270 < th dose independent rect. 24 11
282 105.97 wind 7.0 720 < th dose independent rect. 23 6
287 105.99 humidity 50.0 90 > th dose dependent rect. 17 4
296 106.02 humidity 50.0 270 > th dose dependent rect. 15 4
311 106.07 temperature 10.0 270 > th dose dependent rect. 11 13
315 106.09 wind 9.0 270 < th dose independent rect. 11 13
317 106.09 radiation 10.0 90 < th dose dependent rect. 11 23
322 106.12 temperature 30.0 270 < th dose independent rect. 15 14
337 106.20 radiation 20.0 270 < th dose independent rect. 13 7
341 106.21 temperature 10.0 10 > th dose independent rect. 2 10
343 106.21 atmosphere 995.0 10 > th dose independent rect. 2 10
344 106.21 atmosphere 1015.0 10 < th dose independent rect. 2 10
346 106.21 humidity 50.0 270 > th dose independent rect. 24 11
357 106.23 radiation 10.0 90 < th dose dependent no NA NA
366 106.24 radiation 10.0 90 < th dose dependent rect. 9 23
373 106.26 temperature 30.0 10 < th dose dependent rect. 12 9
398 106.30 wind 5.0 720 < th dose independent rect. 24 4
400 106.31 precipitation 0.1 10 < th dose independent rect. 12 14
402 106.31 precipitation 0.1 10 < th dose dependent rect. 12 14
403 106.31 radiation 10.0 90 < th dose dependent rect. 6 23
418 106.35 radiation 20.0 270 < th dose independent rect. 11 9
419 106.35 wind 9.0 10 < th dose independent rect. 2 10
421 106.35 humidity 50.0 720 > th dose independent rect. 17 10
422 106.35 atmosphere 1015.0 720 < th dose independent rect. 5 10
424 106.35 temperature 10.0 720 > th dose independent rect. 15 14
429 106.37 temperature 10.0 720 > th dose independent rect. 21 10
430 106.37 temperature 30.0 720 < th dose independent rect. 21 10
431 106.37 humidity 50.0 720 > th dose independent rect. 21 10
433 106.37 atmosphere 995.0 720 > th dose independent rect. 21 10
434 106.37 radiation 40.0 720 < th dose independent rect. 21 10
435 106.37 temperature 10.0 720 > th dose independent rect. 7 14
436 106.37 radiation 10.0 90 < th dose dependent sin 20 NA
455 106.41 radiation 20.0 720 < th dose independent rect. 17 10
460 106.42 precipitation 0.1 720 < th dose independent rect. 9 18
463 106.42 precipitation 0.1 720 < th dose dependent rect. 9 18
466 106.43 temperature 10.0 720 > th dose independent rect. 17 10
469 106.43 wind 9.0 10 < th dose independent rect. 12 14
481 106.47 precipitation 0.1 720 < th dose independent rect. 23 14
484 106.47 precipitation 0.1 720 < th dose dependent rect. 23 14
494 106.50 radiation 10.0 90 < th dose dependent rect. 2 23
510 106.54 humidity 70.0 10 > th dose independent rect. 18 3
543 106.60 wind 5.0 720 < th dose independent rect. 1 2
546 106.60 temperature 10.0 720 > th dose independent rect. 9 10
547 106.60 atmosphere 1015.0 720 < th dose independent rect. 9 10
548 106.60 temperature 10.0 720 > th dose independent rect. 19 14
549 106.60 humidity 50.0 720 > th dose independent rect. 19 14
550 106.60 atmosphere 995.0 720 > th dose independent rect. 19 14
559 106.62 radiation 1.0 90 < th dose independent sin 21 NA
563 106.63 atmosphere 1015.0 720 < th dose independent rect. 7 14
564 106.63 radiation 1.0 270 > th dose independent rect. 18 22
572 106.65 wind 9.0 720 < th dose independent rect. 7 14
587 106.68 temperature 20.0 720 > th dose independent rect. 14 1
590 106.68 temperature 30.0 30 < th dose dependent rect. 2 19
592 106.69 precipitation 0.1 10 < th dose independent rect. 2 12
595 106.69 precipitation 0.1 10 < th dose dependent rect. 2 12
601 106.70 radiation 40.0 720 < th dose dependent rect. 17 10
621 106.75 atmosphere 995.0 1440 > th dose independent rect. 3 10
622 106.75 temperature 10.0 1440 > th dose independent rect. 13 14
630 106.77 wind 9.0 270 < th dose independent rect. 4 11
672 106.86 wind 9.0 30 < th dose dependent rect. 2 10
688 106.89 wind 9.0 720 < th dose independent rect. 21 18
693 106.90 wind 9.0 720 < th dose independent rect. 9 10
698 106.91 radiation 10.0 90 < th dose dependent rect. 17 23
699 106.92 wind 5.0 4320 < th dose independent rect. 21 1
717 106.95 temperature 15.0 720 > th dose independent rect. 15 23
720 106.96 radiation 1.0 270 > th dose independent rect. 4 12
727 106.96 humidity 50.0 720 > th dose independent rect. 17 18
737 106.98 temperature 30.0 10 < th dose independent rect. 2 10
740 106.98 wind 5.0 4320 > th dose dependent rect. 17 10
744 106.99 atmosphere 1015.0 720 < th dose independent rect. 11 6
745 106.99 wind 9.0 720 < th dose independent rect. 21 10
748 106.99 temperature 10.0 720 > th dose independent rect. 17 18
773 107.03 temperature 10.0 720 > th dose dependent rect. 12 3
774 107.03 atmosphere 1000.0 270 > th dose dependent rect. 15 5
781 107.05 wind 5.0 4320 > th dose independent rect. 21 1
798 107.07 temperature 30.0 270 < th dose independent rect. 9 11
803 107.07 wind 9.0 4320 > th dose dependent rect. 18 3
806 107.09 temperature 10.0 720 > th dose independent rect. 23 6
807 107.09 temperature 30.0 720 < th dose independent rect. 23 6
808 107.09 humidity 50.0 720 > th dose independent rect. 23 6
811 107.09 atmosphere 995.0 720 > th dose independent rect. 23 6
812 107.09 radiation 1.0 720 < th dose independent rect. 23 6
813 107.09 radiation 20.0 720 < th dose independent rect. 23 6
828 107.10 radiation 20.0 720 < th dose dependent rect. 23 6
838 107.12 precipitation 0.1 270 < th dose independent rect. 11 13
843 107.12 temperature 10.0 270 > th dose dependent rect. 4 11
844 107.12 precipitation 0.1 270 < th dose dependent rect. 11 13
889 107.21 temperature 30.0 270 < th dose independent rect. 24 11
898 107.22 atmosphere 995.0 270 > th dose independent rect. 4 11
916 107.25 atmosphere 995.0 720 > th dose independent rect. 21 18
927 107.27 temperature 15.0 720 > th dose independent rect. 23 14
932 107.28 humidity 70.0 30 > th dose dependent rect. 21 5
947 107.31 wind 7.0 4320 < th dose independent rect. 17 9
957 107.33 radiation 40.0 720 < th dose independent rect. 3 6
966 107.34 wind 9.0 720 < th dose independent rect. 19 14
982 107.36 precipitation 0.1 720 < th dose independent rect. 7 14
983 107.36 precipitation 0.1 720 < th dose dependent rect. 7 14
984 107.37 wind 9.0 720 < th dose independent rect. 15 22
992 107.38 atmosphere 995.0 270 > th dose independent rect. 16 13