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Os07g0548500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.89 (0.0334) R2 : 0.805
β1 : 1.91 (0.123) R2dD : 0.109 R2D : 0.0544
β2 : 2.68 (0.0868) R2dC : 0.413 R2C : 0.47
β3 : -1.95 (0.0801) R2dE : 0.256 R2E : 0.264
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.415 (0.0713) R2dN8 : 0.0193 R2N8 : -0.00321
σ : 0.624
deviance : 179.29
__
_____
C
peak time of C : 6.99
E
wheather : temperature
threshold : 19.8
memory length : 249
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 7.25

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
175.8 0.623 8.88 1.94 2.7 -1.95 0.905 0.844 0.425 7.03 19.78 257 19.1 7.15
177.87 0.621 8.89 1.92 2.7 -1.95 0.853 -- 0.412 6.97 19.8 251 19.1 7.23
177.9 0.621 8.88 1.95 2.7 -1.96 -- 0.758 0.426 7.01 19.8 255 19.1 7.13
179.29 0.624 8.89 1.91 2.68 -1.95 -- -- 0.415 6.99 19.8 249 19 7.25
401.01 0.933 8.86 2.09 -- -2.14 -- 0.236 0.749 -- 18.7 54 18.2 9.22
260.79 0.757 8.88 1.65 3.19 -- 0.72 -- 0.357 8.92 -- -- -- --
262.55 0.759 8.88 1.67 3.18 -- -- -- 0.357 8.92 -- -- -- --
328.84 0.845 8.86 2.4 -- -2.07 -- -- 0.578 -- 18.86 216 15.5 10.4
269.73 0.765 8.88 -- 2.71 -1.87 -- -- 0.318 7.06 20.7 205 19.1 7.49
842.28 1.36 8.97 1.67 -- -- -- -- 0.379 -- -- -- -- --
336.18 0.858 8.92 -- 3.19 -- -- -- 0.171 8.88 -- -- -- --
333.23 0.85 9 -- -- -2.35 -- -- 0.259 -- -3.171 77 13.3 13.9
915.87 1.41 9.01 -- -- -- -- -- 0.194 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 177.34 temperature 20.0 270 > th dose independent rect. 19 7
2 178.31 temperature 20.0 90 > th dose independent rect. 21 7
5 179.29 temperature 20.0 10 > th dose independent rect. 21 7
14 186.11 temperature 15.0 90 > th dose dependent rect. 21 7
15 186.14 temperature 10.0 270 > th dose dependent rect. 19 7
27 189.49 temperature 15.0 10 > th dose dependent rect. 21 7
70 197.62 atmosphere 1010.0 90 < th dose independent rect. 21 7
75 199.21 atmosphere 1010.0 270 < th dose independent rect. 19 7
89 200.65 humidity 70.0 30 > th dose dependent rect. 21 7
104 202.16 wind 7.0 270 < th dose dependent rect. 3 3
106 202.23 humidity 50.0 270 > th dose dependent rect. 19 7
119 202.95 humidity 80.0 30 > th dose independent rect. 21 7
120 202.99 precipitation 0.1 270 < th dose independent rect. 3 3
122 202.99 precipitation 0.1 270 < th dose dependent rect. 3 3
124 203.04 wind 5.0 270 < th dose independent rect. 3 3
128 203.16 temperature 15.0 90 > th dose independent rect. 4 17
132 203.26 temperature 20.0 90 > th dose independent rect. 9 18
138 203.62 temperature 15.0 270 > th dose independent rect. 3 15
147 204.13 precipitation 0.1 270 < th dose independent rect. 3 15
149 204.13 precipitation 0.1 270 < th dose dependent rect. 3 15
164 204.95 wind 5.0 270 < th dose independent rect. 2 5
167 205.01 wind 9.0 270 < th dose dependent rect. 2 5
177 205.54 atmosphere 1010.0 270 < th dose independent rect. 3 3
180 205.59 wind 7.0 10 < th dose dependent rect. 4 5
183 205.60 temperature 10.0 270 > th dose independent rect. 3 3
185 205.60 temperature 30.0 270 < th dose independent rect. 3 3
186 205.60 humidity 50.0 270 > th dose independent rect. 3 3
189 205.60 atmosphere 995.0 270 > th dose independent rect. 3 3
191 205.60 radiation 20.0 270 < th dose independent rect. 3 3
194 205.60 temperature 10.0 270 > th dose independent rect. 6 21
195 205.76 atmosphere 1015.0 270 < th dose independent rect. 7 19
203 205.95 radiation 40.0 270 < th dose dependent rect. 3 3
205 206.00 precipitation 0.1 270 < th dose independent rect. 2 5
207 206.00 precipitation 0.1 270 < th dose dependent rect. 2 5
214 206.20 radiation 20.0 270 < th dose independent rect. 2 6
215 206.20 temperature 15.0 10 > th dose independent rect. 9 19
216 206.24 atmosphere 1015.0 270 < th dose independent rect. 6 21
220 206.33 radiation 40.0 90 < th dose independent rect. 3 8
226 206.43 wind 9.0 270 < th dose independent rect. 6 21
231 206.57 humidity 50.0 270 > th dose dependent rect. 3 3
238 206.66 radiation 40.0 270 < th dose dependent rect. 2 7
239 206.69 atmosphere 1015.0 90 < th dose independent rect. 9 18
261 207.06 precipitation 0.1 270 < th dose independent rect. 2 19
263 207.06 precipitation 0.1 270 < th dose dependent rect. 2 19
286 207.58 temperature 10.0 270 > th dose dependent rect. 3 3
302 207.81 atmosphere 1015.0 10 < th dose independent rect. 9 19
318 208.06 temperature 10.0 270 > th dose independent rect. 2 5
320 208.06 temperature 30.0 270 < th dose independent rect. 2 5
321 208.06 humidity 50.0 270 > th dose independent rect. 2 5
323 208.06 atmosphere 995.0 270 > th dose independent rect. 2 5
324 208.06 atmosphere 1015.0 270 < th dose independent rect. 2 5
325 208.06 radiation 40.0 270 < th dose independent rect. 2 5
327 208.06 temperature 10.0 270 > th dose independent rect. 7 19
333 208.08 precipitation 0.1 270 < th dose independent rect. 15 15
334 208.08 precipitation 0.1 270 < th dose dependent rect. 15 15
344 208.32 radiation 10.0 270 < th dose independent rect. 18 9
356 208.50 wind 9.0 270 < th dose independent rect. 7 19
357 208.50 radiation 10.0 270 < th dose dependent rect. 18 9
374 208.81 humidity 50.0 270 > th dose independent rect. 18 9
379 208.81 atmosphere 1015.0 270 < th dose independent rect. 3 15
385 208.93 wind 9.0 90 < th dose independent rect. 4 17
389 208.96 temperature 30.0 90 < th dose independent rect. 21 7
390 208.96 humidity 50.0 90 > th dose independent rect. 21 7
393 208.96 atmosphere 995.0 90 > th dose independent rect. 21 7
394 208.96 radiation 1.0 90 < th dose independent rect. 21 7
400 208.96 atmosphere 1015.0 90 < th dose independent rect. 4 17
404 208.96 radiation 1.0 90 < th dose dependent rect. 21 7
412 209.01 wind 9.0 90 < th dose dependent rect. 3 8
426 209.12 wind 5.0 10 < th dose independent rect. 4 5
427 209.12 wind 9.0 90 < th dose independent rect. 21 7
428 209.15 wind 9.0 270 < th dose independent rect. 18 9
439 209.26 wind 9.0 30 < th dose dependent rect. 21 7
441 209.29 atmosphere 1015.0 90 < th dose dependent rect. 21 7
448 209.43 atmosphere 995.0 270 > th dose independent rect. 18 9
450 209.44 wind 9.0 270 < th dose dependent rect. 18 8
469 209.61 temperature 30.0 270 < th dose independent rect. 19 8
485 209.65 precipitation 0.1 10 < th dose independent rect. 4 5
486 209.65 precipitation 0.1 10 < th dose dependent rect. 4 5
487 209.66 humidity 50.0 270 > th dose dependent rect. 2 5
488 209.67 wind 9.0 270 < th dose independent rect. 3 15
523 209.98 atmosphere 1015.0 10 < th dose dependent rect. 21 7
537 210.05 humidity 80.0 270 > th dose independent rect. 21 5
547 210.17 temperature 10.0 10 > th dose independent rect. 4 5
549 210.17 temperature 30.0 10 < th dose independent rect. 4 5
550 210.17 humidity 50.0 10 > th dose independent rect. 4 5
552 210.17 atmosphere 995.0 10 > th dose independent rect. 4 5
553 210.17 atmosphere 1015.0 10 < th dose independent rect. 4 5
585 210.46 precipitation 0.1 270 < th dose independent rect. 6 21
586 210.46 precipitation 0.1 270 < th dose dependent rect. 6 21
597 210.52 wind 9.0 30 < th dose dependent rect. 4 17
604 210.67 precipitation 0.1 90 < th dose independent rect. 21 7
605 210.67 precipitation 0.1 90 < th dose dependent rect. 21 7
664 210.91 radiation 40.0 10 < th dose independent rect. 4 5
696 211.09 atmosphere 995.0 270 > th dose independent rect. 3 15
705 211.22 temperature 20.0 90 > th dose independent rect. 11 16
707 211.24 atmosphere 1015.0 270 < th dose independent rect. 21 16
758 211.38 atmosphere 995.0 90 > th dose independent rect. 4 17
785 211.52 precipitation 0.1 270 < th dose independent rect. 19 8
786 211.52 precipitation 0.1 270 < th dose independent rect. 1 21
787 211.52 precipitation 0.1 270 < th dose dependent rect. 19 8
788 211.52 precipitation 0.1 270 < th dose dependent rect. 1 21
799 211.58 temperature 10.0 30 > th dose dependent rect. 4 17
815 211.65 precipitation 0.1 270 < th dose independent rect. 7 19
817 211.65 precipitation 0.1 270 < th dose dependent rect. 7 19
820 211.68 temperature 30.0 90 < th dose independent rect. 3 8
830 211.76 wind 9.0 10 < th dose independent rect. 9 19
839 211.84 temperature 10.0 270 > th dose dependent rect. 2 5
894 211.99 temperature 30.0 270 < th dose independent rect. 21 5
895 211.99 humidity 50.0 270 > th dose independent rect. 21 5
898 211.99 atmosphere 995.0 270 > th dose independent rect. 21 5
899 211.99 radiation 1.0 270 < th dose independent rect. 21 5
904 211.99 precipitation 0.1 270 < th dose independent rect. 21 5
908 211.99 radiation 1.0 270 < th dose dependent rect. 21 5
913 211.99 precipitation 0.1 270 < th dose dependent rect. 21 5
928 212.16 temperature 10.0 270 > th dose independent rect. 6 9
929 212.16 atmosphere 1015.0 270 < th dose independent rect. 6 9
930 212.16 temperature 10.0 270 > th dose independent rect. 15 15
949 212.27 wind 9.0 270 < th dose independent rect. 21 5
967 212.45 precipitation 0.1 90 < th dose independent rect. 9 18
969 212.45 precipitation 0.1 90 < th dose dependent rect. 9 18
977 212.51 radiation 40.0 270 < th dose independent rect. 15 15