Os07g0545900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0545900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.29 | 0.349 | 11.7 | 0.14 | 0.914 | 1.58 | -0.0157 | 0.26 | -0.258 | 5.23 | 20.51 | 12 | -- | -- |
| 55.31 | 0.346 | 11.7 | 0.102 | 0.92 | 1.6 | -0.0618 | -- | -0.268 | 5.19 | 20.65 | 14 | -- | -- |
| 55.26 | 0.346 | 11.7 | 0.133 | 0.918 | 1.58 | -- | 0.224 | -0.26 | 5.23 | 20.62 | 13 | -- | -- |
| 55.29 | 0.346 | 11.7 | 0.1 | 0.92 | 1.59 | -- | -- | -0.269 | 5.22 | 20.79 | 13 | -- | -- |
| 89.75 | 0.441 | 11.7 | 0.363 | -- | 1.2 | -- | 1.07 | -0.117 | -- | 15.3 | 2 | -- | -- |
| 93.43 | 0.453 | 11.6 | 0.422 | 0.604 | -- | 0.409 | -- | 0.00367 | 8.12 | -- | -- | -- | -- |
| 93.87 | 0.454 | 11.6 | 0.432 | 0.608 | -- | -- | -- | 0.00256 | 7.91 | -- | -- | -- | -- |
| 90.18 | 0.442 | 11.7 | 0.247 | -- | 1.01 | -- | -- | -0.15 | -- | 20.22 | 4 | -- | -- |
| 55.52 | 0.347 | 11.7 | -- | 0.928 | 1.62 | -- | -- | -0.281 | 5.2 | 20.79 | 13 | -- | -- |
| 113.96 | 0.499 | 11.6 | 0.439 | -- | -- | -- | -- | 0.0107 | -- | -- | -- | -- | -- |
| 98.79 | 0.465 | 11.6 | -- | 0.611 | -- | -- | -- | -0.0456 | 7.86 | -- | -- | -- | -- |
| 91.59 | 0.446 | 11.7 | -- | -- | 1.07 | -- | -- | -0.189 | -- | 19.63 | 3 | -- | -- |
| 119.04 | 0.509 | 11.7 | -- | -- | -- | -- | -- | -0.038 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.64 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 2 | 53.81 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 4 | 54.19 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 15 | 54.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 22 | 55.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 23 | 55.34 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 16 |
| 24 | 55.38 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 34 | 55.52 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 38 | 55.58 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 41 | 55.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 44 | 55.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 49 | 55.72 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 63 | 55.89 | temperature | 25 | 1440 | < th | dose independent | sin | 16 | NA |
| 93 | 56.11 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 16 |
| 101 | 56.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 23 |
| 125 | 56.36 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 147 | 56.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 19 |
| 155 | 56.50 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 276 | 57.01 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 304 | 57.10 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 316 | 57.13 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 335 | 57.18 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 22 |
| 376 | 57.32 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 417 | 57.44 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 458 | 57.57 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 463 | 57.58 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 480 | 57.62 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 504 | 57.67 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 544 | 57.74 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 548 | 57.74 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 559 | 57.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 562 | 57.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 17 |
| 568 | 57.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 569 | 57.80 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 582 | 57.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 594 | 57.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 642 | 57.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 692 | 58.06 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 758 | 58.20 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 924 | 58.54 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 955 | 58.59 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 958 | 58.60 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 970 | 58.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 8 | 23 |
| 989 | 58.66 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 991 | 58.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 23 |