BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0545900 Os07g0545900|J053074I19
         (63 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18975.1  | chr4:10392170-10393665 REVERSE LENGTH=288           82   4e-17
AT4G21190.1  | chr4:11292493-11293763 REVERSE LENGTH=308           45   9e-06

>AT4G18975.1 | chr4:10392170-10393665 REVERSE LENGTH=288
          Length = 287

 Score = 82.4 bits (202), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query: 1   IYADMEELGVHPDEDTTRRIGRAFVTLGQEDKEKIVLEKYLKKYKYMHFNGERVRVRR 58
           ++ADMEEL V PDED+ RR+ RAF  L QE+  K++L +YL +YKY++FNGERVRV+R
Sbjct: 224 VFADMEELKVSPDEDSARRVARAFRELNQEENRKLILRRYLSEYKYIYFNGERVRVKR 281



>AT4G21190.1 | chr4:11292493-11293763 REVERSE LENGTH=308
          Length = 307

 Score = 44.7 bits (104), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 1   IYADMEELGVHPDEDTTRRIGRAFVTLGQEDKEKIVLEKY-LKKYKYMHFNGERVRVR 57
           ++ADMEELGV P+      +G+ FV L  +DK + +++KY   ++++ +  G RV+V+
Sbjct: 184 VFADMEELGVKPNVAIVSMVGKVFVKLEMKDKYEKLMKKYPPPQWEFRYIKGRRVKVK 241



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.141    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,454,195
Number of extensions: 49471
Number of successful extensions: 176
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 2
Length of query: 63
Length of database: 11,106,569
Length adjustment: 36
Effective length of query: 27
Effective length of database: 10,119,593
Effective search space: 273229011
Effective search space used: 273229011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)