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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0545100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1218 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.2 (0.0538) R2 : 0.581
β1 : -4.21 (0.204) R2dD : 0.453 R2D : 0.236
β2 : 1.52 (0.148) R2dC : 0.113 R2C : -0.0288
β3 : 4.4 (0.249) R2dE : 0.386 R2E : 0.018
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.221 (0.118) R2dN8 : 0.00496 R2N8 : -0.0287
σ : 0.991
deviance : 452.77
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_____
C
peak time of C : 18.9
E
wheather : temperature
threshold : 13.17
memory length : 1183
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 11.2
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
445.01 0.991 6.23 -4.7 1.12 3.8 -1.9 -2.16 -0.322 19 17.58 1171 11.7 --
444.47 0.982 6.15 -4.25 1.37 4.39 -1.97 -- -0.182 18.8 13.06 1198 11.7 --
453.04 0.991 6.24 -4.71 1.25 4.12 -- -2.01 -0.361 19.2 16.04 1180 11.5 --
452.77 0.991 6.2 -4.21 1.52 4.4 -- -- -0.221 18.9 13.17 1183 11.2 --
472.16 1.01 6.2 -4.56 -- 3.91 -- -1.43 -0.329 -- 14.7 2062 11.3 --
692.74 1.23 6.04 -3.14 1.2 -- -0.0165 -- 0.375 23.2 -- -- -- --
692.74 1.23 6.04 -3.14 1.2 -- -- -- 0.375 23.3 -- -- -- --
474.65 1.01 6.16 -4.26 -- 3.86 -- -- -0.275 -- 13.91 1945 10.3 --
869.44 1.37 6.04 -- 1.34 2.79 -- -- 0.464 18.8 5.743 1152 11.7 --
783.43 1.31 6.01 -3.11 -- -- -- -- 0.386 -- -- -- -- --
952.21 1.44 5.96 -- 1.17 -- -- -- 0.725 23.1 -- -- -- --
870.94 1.37 5.99 -- -- 2.4 -- -- 0.486 -- 20.69 769 10.8 --
1038.21 1.5 5.94 -- -- -- -- -- 0.731 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 441.78 radiation 30 14400 < th dose independent rect. 16 3
7 443.15 radiation 30 14400 < th dose independent rect. 16 12
12 444.67 wind 5 43200 > th dose dependent rect. 13 19
17 445.55 wind 5 43200 > th dose dependent rect. 13 16
20 445.84 temperature 15 1440 > th dose dependent rect. 16 2
27 446.54 wind 5 43200 > th dose dependent sin 15 NA
38 447.89 wind 7 43200 < th dose independent rect. 13 21
42 448.46 wind 7 43200 > th dose independent rect. 13 21
75 450.46 wind 5 43200 > th dose independent sin 14 NA
76 450.48 wind 5 43200 > th dose independent rect. 10 21
93 450.97 temperature 10 1440 > th dose dependent rect. 15 7
130 451.97 wind 7 43200 < th dose independent sin 14 NA
157 452.28 temperature 20 1440 > th dose dependent rect. 13 10
158 452.28 wind 5 43200 > th dose dependent rect. 2 23
168 452.39 wind 5 43200 > th dose dependent rect. 23 23
174 452.46 wind 5 43200 > th dose dependent no NA NA
221 453.11 wind 5 43200 > th dose dependent rect. 18 23
229 453.21 wind 5 43200 > th dose dependent rect. 20 23
261 453.82 wind 5 43200 < th dose independent rect. 10 21
297 454.24 wind 7 43200 > th dose independent rect. 14 15
311 454.41 wind 5 43200 > th dose dependent rect. 16 23
316 454.48 wind 5 43200 > th dose independent rect. 2 23
329 454.65 wind 5 43200 > th dose independent no NA NA
332 454.72 wind 5 43200 > th dose independent rect. 23 23
338 454.75 wind 5 43200 > th dose independent rect. 18 23
371 455.20 wind 5 43200 > th dose independent rect. 20 23
396 455.44 wind 7 43200 < th dose independent rect. 18 23
404 455.49 wind 7 43200 < th dose independent rect. 6 23
445 455.98 wind 7 43200 < th dose independent no NA NA
452 456.01 wind 7 43200 < th dose independent rect. 2 23
459 456.05 wind 7 43200 < th dose independent rect. 23 23
475 456.33 wind 9 43200 < th dose independent rect. 18 12
499 456.51 temperature 15 1440 > th dose dependent sin 19 NA
500 456.52 wind 9 43200 > th dose independent rect. 17 13
539 456.81 wind 7 43200 < th dose independent rect. 4 23
628 457.52 wind 5 43200 > th dose dependent rect. 19 2
910 459.63 wind 5 43200 < th dose independent rect. 22 20