BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0545100 Os07g0545100|AK105372
(166 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G32280.1 | chr2:13713210-13713977 FORWARD LENGTH=164 133 4e-32
AT4G21310.1 | chr4:11339134-11339787 REVERSE LENGTH=169 119 6e-28
AT1G11500.1 | chr1:3870833-3871570 FORWARD LENGTH=185 71 3e-13
AT1G05291.1 | chr1:1541348-1542323 REVERSE LENGTH=205 54 4e-08
>AT2G32280.1 | chr2:13713210-13713977 FORWARD LENGTH=164
Length = 163
Score = 133 bits (335), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/162 (39%), Positives = 94/162 (58%), Gaps = 3/162 (1%)
Query: 1 MARVEAVVVCLLIIAMDVVAGVLGIHAEKAQHQGRRLRILFIECRQPVRRAYELGXXXXX 60
M ++ ++VCL+I+ +DV A +LGI AE AQ+Q + +R+ ECR+P + A+ LG
Sbjct: 1 MTKIGGILVCLVIVGLDVAAAILGIQAEVAQNQVKHMRLWLFECREPSQDAFRLGLGAAA 60
Query: 61 XXXXXXXXXXXVGGCSCACSRD--RRATPNRQMASFALVISWXXXXXXXXXXXXXXXPNA 118
VGGC C CS+D +R++ RQ++ LV++W N+
Sbjct: 61 ILVMAHVLLNLVGGCLCICSQDEFQRSSSTRQISMACLVLTWIVFAVGFGSIVIGTMSNS 120
Query: 119 ERKAAKCSLPRHHFLSIGGILCFVHGLFCLVYYASANAAKRE 160
+ +++ C HHFLSIGGILCF+H LFC+ YY SA AAK E
Sbjct: 121 KSRSS-CGFTHHHFLSIGGILCFLHALFCVAYYVSATAAKDE 161
>AT4G21310.1 | chr4:11339134-11339787 REVERSE LENGTH=169
Length = 168
Score = 119 bits (299), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 87/163 (53%), Gaps = 3/163 (1%)
Query: 1 MARVEAVVVCLLIIAMDVVAGVLGIHAEKAQHQGRRLRILFIECRQPVRRAYELGXXXXX 60
MAR +C+LI+AMDV AG+LGI AE AQ++ + L++ ECR P A++ G
Sbjct: 1 MARNVGFFICILILAMDVSAGILGIEAEIAQNKVKHLKMWIFECRDPSYTAFKYGLAACI 60
Query: 61 XXXXXXXXXXXVGGCSCACSRD--RRATPNRQMASFALVISWXXXXXXXXXXXXXXXPNA 118
+GGC C SR +++ N+Q+A +L+ +W N+
Sbjct: 61 LLVLAHVTANFLGGCLCVASRQDLEKSSANKQLAVASLIFTWIILAIAFSMLIVGTMANS 120
Query: 119 ERKAAKCSLPRHHFLSIGGILCFVHGLFCLVYYASANAAKREE 161
R C + H LSIGGILCFVHGLF + YY SA A+ RE+
Sbjct: 121 -RSRKNCGISHHRVLSIGGILCFVHGLFAVAYYISATASTREQ 162
>AT1G11500.1 | chr1:3870833-3871570 FORWARD LENGTH=185
Length = 184
Score = 70.9 bits (172), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
Query: 8 VVCLLIIAMDVVAGVLGIHAEKAQHQGRRLRILFIEC-------RQPVRRAYELGXXXXX 60
+V ++II D+ A VLGI AE AQ + R P A+ G
Sbjct: 8 LVSVVIICADITATVLGIEAEIAQSKAPHHHHQQHSRHSGSGCRRSPSDGAFAEGVAAMV 67
Query: 61 XXXXXXXXXXXVGGCSCACSRD--RRATPNRQMASFALVISWXXXXXXXXXXXXXXXPNA 118
+GGC+ S+ +RAT N+ +A LV+SW N+
Sbjct: 68 LLFIVHVLANVLGGCTYIRSKQDFKRATANKILAVAFLVLSWIFFVVSYSTLMIGTLANS 127
Query: 119 ERKAAKCSLPRHHFLSIGGILCFVHGLFCLVYYASANAAKREE 161
R CSLP F IGGI C HG+ YY SA AAK+E+
Sbjct: 128 -RTNRLCSLPHRWFFLIGGIFCLGHGVVTSAYYVSAIAAKKED 169
>AT1G05291.1 | chr1:1541348-1542323 REVERSE LENGTH=205
Length = 204
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 63/151 (41%), Gaps = 8/151 (5%)
Query: 12 LIIAMDVVAGVLGIHAEKAQHQGRRLRILFIECRQPVRRAYELGXXXXXXXXXXXXXXXX 71
L + +D+VAG +G+ A+ AQ + ++ EC+ P + A+ LG
Sbjct: 23 LTVGLDIVAGFVGLQAQAAQQYVKHDKL---ECKAPSKTAFVLGIIAVSCLATAHVSANV 79
Query: 72 VGGCSCACSRDRRATPNRQMASFA----LVISWXXXXXXXXXXXXXXXPNAERKAAKCSL 127
+G + A P ++ ++ L + W N E + +C
Sbjct: 80 IGCSISNLFQALGALPKNKITTYFNMACLFLIWVVGIFGALILANGIWSNTESRI-RCRF 138
Query: 128 PRHHFLSIGGILCFVHGLFCLVYYASANAAK 158
+H SIGG +CF+H + +YY S+ A+
Sbjct: 139 TNNHVFSIGGKVCFLHAIVSGIYYISSIVAR 169
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.330 0.140 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,696,673
Number of extensions: 73339
Number of successful extensions: 175
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 4
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 108 (46.2 bits)