FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0527900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.16 (0.0421) R2 : 0.017
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.249 (0.0886) R2dN8 : 0.022 R2N8 : 0.017
σ : 0.793
deviance : 288.56
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
265.56 0.766 3.43 -1.64 0.159 -5.07 0.398 24.8 -0.197 2.75 999.7 6 -- --
274.04 0.777 3.15 -0.0348 0.181 -0.678 0.443 -- -0.198 2.39 999.7 6 -- --
263.44 0.756 3.44 -1.7 0.155 -5.41 -- 26.4 -0.199 2.01 999.6 3 -- --
273.37 0.775 3.15 -0.0321 0.199 -0.645 -- -- -0.19 1.91 1001 11 -- --
264.83 0.762 3.47 -1.82 -- -5.78 -- 28.5 -0.195 -- 999.5 3 -- --
286.29 0.793 3.16 0.0819 0.161 -- 0.4 -- -0.242 2.57 -- -- -- --
286.8 0.793 3.16 0.0718 0.162 -- -- -- -0.244 1.82 -- -- -- --
275.7 0.777 3.15 -0.0394 -- -0.7 -- -- -0.197 -- 999.5 3 -- --
273.4 0.774 3.14 -- 0.198 -0.641 -- -- -0.187 1.91 1001 11 -- --
288.39 0.794 3.16 0.0785 -- -- -- -- -0.241 -- -- -- -- --
286.93 0.792 3.16 -- 0.164 -- -- -- -0.252 1.83 -- -- -- --
274.16 0.774 3.15 -- -- -0.787 -- -- -0.194 -- 999.1 5 -- --
288.56 0.793 3.16 -- -- -- -- -- -0.249 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 259.12 atmosphere 1015 720 < th dose dependent rect. 22 4
2 260.10 atmosphere 1015 720 < th dose dependent rect. 23 2
10 262.32 atmosphere 1015 270 < th dose dependent rect. 22 12
11 262.59 atmosphere 995 720 > th dose dependent rect. 17 13
12 262.85 atmosphere 1015 720 < th dose dependent rect. 14 13
14 262.99 atmosphere 1015 720 < th dose dependent rect. 14 19
15 263.04 atmosphere 995 720 > th dose dependent rect. 18 11
37 263.80 temperature 30 10 > th dose dependent rect. 18 16
40 263.87 temperature 25 4320 > th dose independent rect. 24 2
41 263.89 temperature 25 4320 < th dose independent rect. 3 1
50 264.07 atmosphere 1015 90 < th dose dependent rect. 5 23
57 264.22 atmosphere 995 720 > th dose dependent rect. 10 20
58 264.22 atmosphere 1015 30 < th dose dependent rect. 7 21
68 264.43 atmosphere 1000 10 < th dose independent rect. 23 21
71 264.45 atmosphere 1000 10 < th dose independent rect. 23 18
72 264.46 atmosphere 1000 10 < th dose independent rect. 9 21
87 264.55 atmosphere 995 720 > th dose dependent rect. 13 17
108 264.67 atmosphere 1000 90 < th dose independent rect. 8 21
109 264.67 temperature 25 4320 > th dose dependent rect. 24 1
114 264.73 atmosphere 1000 270 < th dose independent rect. 22 4
125 264.81 humidity 70 10 < th dose dependent rect. 18 15
134 264.86 atmosphere 995 90 > th dose dependent rect. 3 22
138 264.88 atmosphere 1010 90 < th dose dependent rect. 23 21
140 264.89 temperature 25 4320 < th dose independent rect. 1 1
172 265.13 atmosphere 1015 270 < th dose dependent rect. 21 21
177 265.17 temperature 25 4320 > th dose independent rect. 3 1
184 265.21 atmosphere 1010 720 < th dose dependent sin 14 NA
189 265.27 atmosphere 995 10 > th dose dependent rect. 19 23
208 265.42 atmosphere 1010 10 < th dose dependent rect. 24 11
215 265.47 temperature 25 4320 < th dose independent rect. 24 4
227 265.52 atmosphere 1000 720 > th dose dependent sin 13 NA
232 265.55 atmosphere 1005 720 > th dose independent rect. 17 13
254 265.64 temperature 30 10 < th dose independent rect. 4 21
271 265.69 atmosphere 1000 1440 > th dose independent rect. 22 1
294 265.82 atmosphere 1010 10 < th dose dependent rect. 24 20
336 266.05 atmosphere 1015 720 < th dose dependent rect. 15 2
391 266.28 temperature 25 4320 > th dose dependent rect. 23 9
400 266.33 atmosphere 1000 10 < th dose independent rect. 23 5
412 266.38 temperature 25 4320 > th dose dependent rect. 24 7
424 266.46 atmosphere 1005 720 < th dose independent rect. 16 15
443 266.50 atmosphere 1015 720 < th dose dependent rect. 6 20
444 266.51 atmosphere 1005 720 < th dose independent rect. 16 13
481 266.67 temperature 30 10 < th dose dependent rect. 4 21
504 266.75 atmosphere 1010 90 < th dose dependent rect. 15 20
526 266.83 radiation 1 30 > th dose dependent rect. 18 1
570 266.95 atmosphere 1015 30 < th dose dependent rect. 14 14
577 267.01 atmosphere 1010 90 < th dose dependent rect. 1 2
594 267.07 atmosphere 1000 10 < th dose independent rect. 18 23
620 267.16 radiation 1 30 > th dose independent rect. 18 1
639 267.19 atmosphere 1000 90 < th dose independent rect. 18 23
683 267.30 atmosphere 995 720 > th dose dependent rect. 18 4
706 267.39 atmosphere 1005 720 < th dose independent sin 13 NA
711 267.40 atmosphere 1000 90 < th dose independent rect. 13 23
726 267.43 atmosphere 1005 720 > th dose independent sin 13 NA
732 267.45 humidity 60 30 < th dose dependent rect. 18 17
735 267.46 atmosphere 995 720 > th dose dependent rect. 17 21
749 267.50 atmosphere 1000 10 < th dose independent rect. 15 23
770 267.53 atmosphere 1010 90 < th dose dependent rect. 11 23
787 267.57 atmosphere 1000 10 < th dose independent rect. 13 23
792 267.59 atmosphere 1000 10 > th dose independent no NA NA
794 267.59 atmosphere 1000 10 < th dose independent no NA NA
817 267.63 humidity 60 30 < th dose dependent rect. 18 1
888 267.74 atmosphere 1000 10 < th dose independent rect. 5 23
899 267.77 atmosphere 1010 10 < th dose dependent rect. 14 21
911 267.80 atmosphere 1000 10 < th dose independent rect. 11 23
950 267.88 atmosphere 1010 720 < th dose dependent no NA NA
958 267.90 temperature 30 10 > th dose independent rect. 18 18
960 267.90 atmosphere 1000 30 < th dose independent rect. 1 23
978 267.94 humidity 60 10 < th dose independent rect. 18 16
980 267.94 atmosphere 1000 30 < th dose independent rect. 3 23
991 267.98 temperature 30 10 > th dose independent rect. 14 22