Os07g0525900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chalcone synthase (EC 2.3.1.74) (Naringenin-chalcone synthase).
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Os07g0525900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chalcone synthase (EC 2.3.1.74) (Naringenin-chalcone synthase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 504.89 | 1.06 | 3.86 | -0.326 | 1.57 | -1.21 | 0.548 | 0.479 | 0.913 | 3.4 | 11.62 | 1303 | -- | -- |
| 505.16 | 1.05 | 3.85 | -0.392 | 1.57 | -1.2 | 0.599 | -- | 0.9 | 3.37 | 11.62 | 1296 | -- | -- |
| 505.58 | 1.05 | 3.86 | -0.32 | 1.57 | -1.22 | -- | 0.629 | 0.917 | 3.36 | 11.61 | 1292 | -- | -- |
| 506.16 | 1.05 | 3.87 | -0.406 | 1.57 | -1.2 | -- | -- | 0.878 | 3.34 | 11.61 | 1290 | -- | -- |
| 543.42 | 1.09 | 3.87 | -0.596 | -- | -1.78 | -- | 0.416 | 0.567 | -- | 2.928 | 1913 | -- | -- |
| 545.1 | 1.09 | 3.94 | -0.715 | 1.47 | -- | 0.422 | -- | 0.557 | 4.06 | -- | -- | -- | -- |
| 545.61 | 1.09 | 3.94 | -0.72 | 1.47 | -- | -- | -- | 0.555 | 4.06 | -- | -- | -- | -- |
| 530.99 | 1.07 | 3.89 | -0.511 | -- | -2 | -- | -- | 0.852 | -- | 3.05 | 1908 | -- | -- |
| 509.87 | 1.05 | 3.86 | -- | 1.61 | -1.29 | -- | -- | 0.943 | 3.14 | 11.61 | 1258 | -- | -- |
| 663.01 | 1.2 | 3.94 | -0.661 | -- | -- | -- | -- | 0.594 | -- | -- | -- | -- | -- |
| 559.28 | 1.11 | 3.92 | -- | 1.45 | -- | -- | -- | 0.635 | 4.07 | -- | -- | -- | -- |
| 535.82 | 1.08 | 3.94 | -- | -- | -2.26 | -- | -- | 0.823 | -- | 2.093 | 1937 | -- | -- |
| 674.52 | 1.21 | 3.93 | -- | -- | -- | -- | -- | 0.667 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 495.86 | wind | 7 | 720 | < th | dose independent | rect. | 15 | 16 |
| 3 | 497.97 | wind | 7 | 720 | > th | dose independent | rect. | 15 | 20 |
| 6 | 498.81 | wind | 7 | 720 | > th | dose independent | rect. | 16 | 10 |
| 9 | 499.12 | wind | 7 | 720 | > th | dose independent | rect. | 16 | 8 |
| 14 | 499.30 | wind | 7 | 720 | > th | dose independent | rect. | 16 | 1 |
| 24 | 499.60 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 27 | 499.68 | wind | 7 | 720 | < th | dose independent | sin | 14 | NA |
| 32 | 499.91 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 34 | 499.96 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 47 | 500.51 | temperature | 25 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 84 | 501.17 | temperature | 30 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 90 | 501.22 | temperature | 30 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 126 | 501.44 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 128 | 501.45 | temperature | 25 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 139 | 501.50 | wind | 5 | 720 | > th | dose independent | rect. | 21 | 2 |
| 142 | 501.50 | wind | 7 | 720 | > th | dose dependent | rect. | 15 | 13 |
| 180 | 501.61 | temperature | 25 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 248 | 501.78 | temperature | 25 | 43200 | > th | dose independent | sin | 0 | NA |
| 266 | 501.80 | temperature | 25 | 43200 | > th | dose dependent | rect. | 24 | 13 |
| 276 | 501.82 | temperature | 25 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 286 | 501.83 | wind | 7 | 720 | > th | dose independent | sin | 12 | NA |
| 311 | 501.86 | wind | 3 | 720 | > th | dose dependent | rect. | 21 | 2 |
| 317 | 501.87 | temperature | 25 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 345 | 501.91 | temperature | 25 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 390 | 501.97 | temperature | 25 | 43200 | < th | dose independent | sin | 0 | NA |
| 455 | 502.05 | temperature | 25 | 43200 | > th | dose dependent | sin | 3 | NA |
| 566 | 502.15 | temperature | 20 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 625 | 502.22 | temperature | 20 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 631 | 502.22 | temperature | 30 | 43200 | > th | dose dependent | rect. | 16 | 20 |
| 637 | 502.23 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 19 |
| 647 | 502.24 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 664 | 502.25 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 19 |
| 760 | 502.32 | temperature | 30 | 43200 | < th | dose independent | rect. | 17 | 16 |
| 769 | 502.32 | temperature | 30 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 783 | 502.33 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 788 | 502.33 | temperature | 20 | 43200 | > th | dose dependent | rect. | 2 | 3 |
| 806 | 502.35 | temperature | 30 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 935 | 502.44 | temperature | 30 | 43200 | > th | dose dependent | sin | 11 | NA |
| 980 | 502.47 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 16 |