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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0525500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chalcone synthase (EC 2.3.1.74) (Naringenin-chalcone synthase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.37 (0.0211) R2 : 8.2e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0086 (0.0445) R2dN8 : 0.000106 R2N8 : 8.2e-05
σ : 0.398
deviance : 72.61
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
68 0.387 3.25 1.19 0.102 -0.87 -0.182 6.24 0.118 5.85 28.56 2073 -- --
70.13 0.39 3.37 0.146 0.159 -0.122 -0.214 -- -0.00173 5.94 33.7 4182 -- --
67.92 0.384 3.24 1.22 0.105 -0.857 -- 6.31 0.133 6.77 28.44 1800 -- --
70.15 0.39 3.36 0.209 0.154 -0.215 -- -- 0.0614 6.41 2.699 3295 -- --
68.47 0.385 3.24 1.29 -- -0.925 -- 6.69 0.139 -- 28.41 1865 -- --
70.84 0.395 3.37 0.123 0.156 -- -0.213 -- 0.0185 6.5 -- -- -- --
70.95 0.394 3.37 0.12 0.155 -- -- -- 0.0193 6.64 -- -- -- --
71.04 0.393 3.36 0.254 -- -0.246 -- -- 0.0832 -- 14.9 6372 -- --
70.79 0.392 3.36 -- 0.139 -0.187 -- -- 0.0303 5.77 1.962 898 -- --
72.2 0.397 3.37 0.124 -- -- -- -- 0.0224 -- -- -- -- --
71.34 0.395 3.37 -- 0.156 -- -- -- 0.00584 6.59 -- -- -- --
71.09 0.393 3.36 -- -- -0.305 -- -- 0.0441 -- 12.79 410 -- --
72.61 0.398 3.37 -- -- -- -- -- 0.0086 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.12 humidity 80 90 < th dose independent rect. 24 7
8 64.92 humidity 90 90 < th dose dependent rect. 1 7
9 64.97 humidity 80 10 < th dose dependent rect. 5 3
13 64.98 humidity 80 10 < th dose dependent rect. 24 8
31 65.06 humidity 80 90 < th dose independent rect. 6 2
44 65.27 radiation 10 30 > th dose dependent rect. 7 1
46 65.31 humidity 70 90 < th dose dependent rect. 18 14
47 65.31 radiation 10 30 > th dose dependent rect. 16 16
48 65.35 humidity 80 10 < th dose dependent rect. 20 12
49 65.37 humidity 70 90 < th dose independent rect. 18 14
55 65.43 humidity 70 10 < th dose independent rect. 7 1
227 65.53 radiation 20 90 > th dose independent rect. 6 1
710 66.53 humidity 70 10 < th dose independent rect. 16 17
734 66.66 atmosphere 1005 30 > th dose dependent rect. 7 1
754 66.82 radiation 30 30 < th dose independent sin 11 NA
793 66.97 atmosphere 1005 90 > th dose dependent rect. 2 1
794 67.00 atmosphere 1005 10 > th dose dependent rect. 2 2
804 67.08 atmosphere 1000 30 > th dose independent rect. 3 23
816 67.21 radiation 1 43200 < th dose dependent rect. 3 1
847 67.35 temperature 30 14400 < th dose independent rect. 11 1
848 67.35 temperature 30 14400 > th dose dependent rect. 15 1
851 67.36 temperature 30 14400 > th dose independent rect. 11 1
853 67.38 humidity 70 1440 > th dose independent rect. 4 3
854 67.38 temperature 30 14400 < th dose independent rect. 11 4
857 67.41 temperature 30 14400 > th dose independent rect. 11 4
867 67.44 humidity 80 720 > th dose dependent rect. 3 1
910 67.48 radiation 10 10 > th dose dependent sin 11 NA
977 67.52 temperature 30 14400 < th dose independent sin 18 NA