BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0525500 Os07g0525500|Os07g0525500
(398 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396 340 5e-94
AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393 229 2e-60
AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386 213 1e-55
AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396 204 8e-53
>AT5G13930.1 | chr5:4488762-4490035 FORWARD LENGTH=396
Length = 395
Score = 340 bits (873), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 173/394 (43%), Positives = 235/394 (59%), Gaps = 7/394 (1%)
Query: 1 MATTSHVTVHDIRRAQRADTTAAVLAIGTANPVTCISQADYPDYYFRITNTEHLTDLKRK 60
M ++ +IR+AQRAD A +LAIGTANP + QA+YPDYYFRITN+EH+TDLK K
Sbjct: 1 MVMAGASSLDEIRQAQRADGPAGILAIGTANPENHVLQAEYPDYYFRITNSEHMTDLKEK 60
Query: 61 LNNLCQASGADKRFFHHNEEMIAAHPEFLDRATPSLDARLDIXXXXXXXXXXXXXXXXIV 120
+C S KR H EE + +P PSLD R DI I
Sbjct: 61 FKRMCDKSTIRKRHMHLTEEFLKENPHMCAYMAPSLDTRQDIVVVEVPKLGKEAAVKAIK 120
Query: 121 RWGRPAADITHLVVATNAGAQAPGADHRLASLLGLRPTVRRTMLHLSGCSAGAAALRLAK 180
WG+P + ITH+V T +G PGAD++L LLGLRP+V+R M++ GC AG LR+AK
Sbjct: 121 EWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRIAK 180
Query: 181 DLAENSRGARVLVACVELNVVAFHGLKEDYPQTLTCQGLFXXXXXXXXXXXXXXRPV-ER 239
DLAEN+RGARVLV C E+ V F G + + +L Q LF V E+
Sbjct: 181 DLAENNRGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFSDGAAALIVGSDPDTSVGEK 240
Query: 240 PLFEMVAVSQAVIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLA 299
P+FEMV+ +Q ++P ++ A++ L E GL H+ +KD+ L + N + L +AF+ LG++
Sbjct: 241 PIFEMVSAAQTILPDSDGAIDGHLREVGLTFHL-LKDVPGLISKNIVKSLDEAFKPLGIS 299
Query: 300 GVEWNDLFWVVHPGAPSILDQIESALRLEPGKLAASRKVLREYGNMLGSTLIFVLDEQXX 359
+WN LFW+ HPG P+ILDQ+E L L+ K+ A+R VL EYGNM + ++F+LDE
Sbjct: 300 --DWNSLFWIAHPGGPAILDQVEIKLGLKEEKMRATRHVLSEYGNMSSACVLFILDEMRR 357
Query: 360 XXXXXXXXXSA---EWGVMMGFGPGFTIETMVLH 390
+ EWGV+ GFGPG T+ET+VLH
Sbjct: 358 KSAKDGVATTGEGLEWGVLFGFGPGLTVETVVLH 391
>AT4G34850.1 | chr4:16608349-16609720 FORWARD LENGTH=393
Length = 392
Score = 229 bits (584), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/369 (34%), Positives = 190/369 (51%), Gaps = 4/369 (1%)
Query: 22 AAVLAIGTANPVTCISQADYPDYYFRITNTEHLTDLKRKLNNLCQASGADKRFFHHNEEM 81
A +LA+G A P + Q D YF+ T + +LK+KL LC+ + R+ +EE+
Sbjct: 20 ATILALGKAFPHQLVMQEYLVDGYFKTTKCDD-PELKQKLTRLCKTTTVKTRYVVMSEEI 78
Query: 82 IAAHPEFLDRATPSLDARLDIXXXXXXXXXXXXXXXXIVRWGRPAADITHLVVATNAGAQ 141
+ +PE ++ RLDI I WGR +DITH+V +++ A+
Sbjct: 79 LKKYPELAIEGGSTVTQRLDICNDAVTEMAVEASRACIKNWGRSISDITHVVYVSSSEAR 138
Query: 142 APGADHRLASLLGLRPTVRRTMLHLSGCSAGAAALRLAKDLAENSRGARVLVACVELNVV 201
PG D LA LGL P R +L+ GCS G A LR+AKD+AEN+ G+RVL+A E ++
Sbjct: 139 LPGGDLYLAKGLGLSPDTHRVLLYFVGCSGGVAGLRVAKDIAENNPGSRVLLATSETTII 198
Query: 202 AFHGLKEDYPQTLTCQGLFXXXXXXXXXXXXXXRPVERPLFEMVAVSQAVIPGTEHALNM 261
F D P L LF E+PLFE+ Q +P TE ++
Sbjct: 199 GFKPPSVDRPYDLVGVALFGDGAGAMIIGSDPDPICEKPLFELHTAIQNFLPETEKTIDG 258
Query: 262 RLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVVHPGAPSILDQI 321
RLTE G++ +S ++L + N + + GLA +N +FW VHPG P+IL++I
Sbjct: 259 RLTEQGINFKLS-RELPQIIEDNVENFCKKLIGKAGLAHKNYNQMFWAVHPGGPAILNRI 317
Query: 322 ESALRLEPGKLAASRKVLREYGNMLGSTLIFVLDE--QXXXXXXXXXXXSAEWGVMMGFG 379
E L L P KL+ SR+ L +YGN +++++VL+ + EWG+++ FG
Sbjct: 318 EKRLNLSPEKLSPSRRALMDYGNASSNSIVYVLEYMLEESKKVRNMNEEENEWGLILAFG 377
Query: 380 PGFTIETMV 388
PG T E ++
Sbjct: 378 PGVTFEGII 386
>AT4G00040.1 | chr4:14653-15897 FORWARD LENGTH=386
Length = 385
Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/369 (32%), Positives = 185/369 (50%), Gaps = 4/369 (1%)
Query: 22 AAVLAIGTANPVTCISQADYPDYYFRITNTEHLTDLKRKLNNLCQASGADKRFFHHNEEM 81
A VLA+G A P +SQ + + Y R ++L+ +K KL +LC+++ R+ + E
Sbjct: 19 ATVLALGKALPSNVVSQENLVEEYLREIKCDNLS-IKDKLQHLCKSTTVKTRYTVMSRET 77
Query: 82 IAAHPEFLDRATPSLDARLDIXXXXXXXXXXXXXXXXIVRWGRPAADITHLVVATNAGAQ 141
+ +PE +P++ RL+I I WGR DITHLV +++ +
Sbjct: 78 LHKYPELATEGSPTIKQRLEIANDAVVQMAYEASLVCIKEWGRAVEDITHLVYVSSSEFR 137
Query: 142 APGADHRLASLLGLRPTVRRTMLHLSGCSAGAAALRLAKDLAENSRGARVLVACVELNVV 201
PG D L++ LGL V+R ML+ GC G + LR+AKD+AEN+ G+RVL+ E V+
Sbjct: 138 LPGGDLYLSAQLGLSNEVQRVMLYFLGCYGGLSGLRVAKDIAENNPGSRVLLTTSETTVL 197
Query: 202 AFHGLKEDYPQTLTCQGLFXXXXXXXXXXXXXXRPVERPLFEMVAVSQAVIPGTEHALNM 261
F + P L LF E P E+ Q +P T+ ++
Sbjct: 198 GFRPPNKARPYNLVGAALFGDGAAALIIGADPTES-ESPFMELHCAMQQFLPQTQGVIDG 256
Query: 262 RLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDLFWVVHPGAPSILDQI 321
RL+E G+ + +DL N +E + G +E NDLFW VHPG P+IL +
Sbjct: 257 RLSEEGITFKLG-RDLPQKIEDNVEEFCKKLVAKAGSGALELNDLFWAVHPGGPAILSGL 315
Query: 322 ESALRLEPGKLAASRKVLREYGNMLGSTLIFVLDEQXXXXXXXXXXXSAEWGVMMGFGPG 381
E+ L+L+P KL SR+ L +YGN+ +T+ +++D + EWG+ + FGPG
Sbjct: 316 ETKLKLKPEKLECSRRALMDYGNVSSNTIFYIMD-KVRDELEKKGTEGEEWGLGLAFGPG 374
Query: 382 FTIETMVLH 390
T E ++
Sbjct: 375 ITFEGFLMR 383
>AT1G02050.1 | chr1:359164-360441 REVERSE LENGTH=396
Length = 395
Score = 204 bits (518), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 124/390 (31%), Positives = 196/390 (50%), Gaps = 5/390 (1%)
Query: 1 MATTSHVTVHDIRRAQRADTTAAVLAIGTANPVTCISQADYPDYYFRITNTEHLTDLKRK 60
M ++ RR A A +LA+G A P + Q + + + R T + +K K
Sbjct: 6 MNGVEKLSSKSTRRVANAGK-ATLLALGKAFPSQVVPQENLVEGFLRDTKCDD-AFIKEK 63
Query: 61 LNNLCQASGADKRFFHHNEEMIAAHPEFLDRATPSLDARLDIXXXXXXXXXXXXXXXXIV 120
L +LC+ + R+ E++A +PE +P++ RL+I I
Sbjct: 64 LEHLCKTTTVKTRYTVLTREILAKYPELTTEGSPTIKQRLEIANEAVVEMALEASLGCIK 123
Query: 121 RWGRPAADITHLVVATNAGAQAPGADHRLASLLGLRPTVRRTMLHLSGCSAGAAALRLAK 180
WGRP DITH+V +++ + PG D L++ LGLR V R ML+ GC G LR+AK
Sbjct: 124 EWGRPVEDITHIVYVSSSEIRLPGGDLYLSAKLGLRNDVNRVMLYFLGCYGGVTGLRVAK 183
Query: 181 DLAENSRGARVLVACVELNVVAFHGLKEDYPQTLTCQGLFXXXXXXXXXXXXXXRPVERP 240
D+AEN+ G+RVL+ E ++ F + P L LF R E P
Sbjct: 184 DIAENNPGSRVLLTTSETTILGFRPPNKARPYDLVGAALF-GDGAAAVIIGADPRECEAP 242
Query: 241 LFEMVAVSQAVIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAG 300
E+ Q +PGT++ + RLTE G++ + +DL N +E + G
Sbjct: 243 FMELHYAVQQFLPGTQNVIEGRLTEEGINFKLG-RDLPQKIEENIEEFCKKLMGKAGDES 301
Query: 301 VEWNDLFWVVHPGAPSILDQIESALRLEPGKLAASRKVLREYGNMLGSTLIFVLDEQXXX 360
+E+ND+FW VHPG P+IL+++E+ L+LE KL +SR+ L +YGN+ +T+++V+ E
Sbjct: 302 MEFNDMFWAVHPGGPAILNRLETKLKLEKEKLESSRRALVDYGNVSSNTILYVM-EYMRD 360
Query: 361 XXXXXXXXSAEWGVMMGFGPGFTIETMVLH 390
+ EWG+ + FGPG T E +++
Sbjct: 361 ELKKKGDAAQEWGLGLAFGPGITFEGLLIR 390
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,328,537
Number of extensions: 255190
Number of successful extensions: 576
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 4
Length of query: 398
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 297
Effective length of database: 8,337,553
Effective search space: 2476253241
Effective search space used: 2476253241
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 113 (48.1 bits)