Os07g0516300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF584 family protein.
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Os07g0516300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF584 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 162.7 | 0.599 | 12.2 | -1.7 | 0.979 | 1.01 | 1.74 | 6.84 | -0.642 | 6.53 | 0.8274 | 4453 | -- | -- |
| 192.66 | 0.646 | 12 | -0.602 | 0.916 | 0.394 | 1.82 | -- | -0.312 | 6.05 | 20.03 | 7817 | -- | -- |
| 170.13 | 0.607 | 12.2 | -1.66 | 0.979 | 1.05 | -- | 6.94 | -0.648 | 6.51 | 0.771 | 4465 | -- | -- |
| 193.89 | 0.649 | 12 | -0.575 | 0.996 | 0.637 | -- | -- | -0.225 | 6 | 22.82 | 24852 | -- | -- |
| 173.44 | 0.613 | 12.2 | -1.21 | -- | 1.87 | -- | 8.85 | -0.453 | -- | 0.2146 | 4982 | -- | -- |
| 196.51 | 0.657 | 12 | -0.519 | 1 | -- | 1.97 | -- | -0.44 | 5.69 | -- | -- | -- | -- |
| 205.77 | 0.672 | 12 | -0.506 | 1.02 | -- | -- | -- | -0.447 | 5.96 | -- | -- | -- | -- |
| 215.96 | 0.684 | 12 | -0.298 | -- | 1.55 | -- | -- | -0.346 | -- | 6.308 | 2251 | -- | -- |
| 198.16 | 0.656 | 12 | -- | 0.879 | 0.724 | -- | -- | -0.107 | 6.08 | 4.786 | 23669 | -- | -- |
| 259.29 | 0.752 | 12 | -0.476 | -- | -- | -- | -- | -0.424 | -- | -- | -- | -- | -- |
| 212.52 | 0.682 | 12 | -- | 1.01 | -- | -- | -- | -0.391 | 5.99 | -- | -- | -- | -- |
| 214.43 | 0.682 | 12 | -- | -- | 1.51 | -- | -- | -0.24 | -- | 4.66 | 2140 | -- | -- |
| 265.26 | 0.76 | 12 | -- | -- | -- | -- | -- | -0.371 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 161.78 | wind | 7 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 2 | 162.21 | wind | 1 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 4 | 162.42 | wind | 1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 11 | 163.71 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 12 | 163.77 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 10 |
| 14 | 164.00 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 8 |
| 15 | 164.01 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 17 |
| 23 | 164.13 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 20 |
| 24 | 164.14 | radiation | 1 | 4320 | < th | dose dependent | rect. | 12 | 14 |
| 28 | 164.25 | radiation | 1 | 4320 | < th | dose dependent | rect. | 9 | 17 |
| 54 | 164.49 | wind | 3 | 43200 | < th | dose dependent | rect. | 15 | 6 |
| 80 | 164.77 | radiation | 1 | 4320 | < th | dose dependent | sin | 18 | NA |
| 119 | 165.11 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 124 | 165.14 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 165 | 165.54 | humidity | 80 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 203 | 166.14 | wind | 1 | 43200 | < th | dose independent | sin | 20 | NA |
| 214 | 166.21 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 14 |
| 217 | 166.23 | humidity | 70 | 43200 | > th | dose dependent | rect. | 21 | 15 |
| 220 | 166.30 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 235 | 166.40 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 18 |
| 237 | 166.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 10 |
| 240 | 166.47 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 14 |
| 243 | 166.47 | radiation | 1 | 4320 | < th | dose independent | rect. | 9 | 21 |
| 247 | 166.48 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 19 |
| 259 | 166.57 | wind | 1 | 43200 | > th | dose independent | sin | 20 | NA |
| 267 | 166.61 | wind | 1 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 272 | 166.63 | humidity | 70 | 43200 | > th | dose dependent | sin | 7 | NA |
| 277 | 166.67 | humidity | 70 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 281 | 166.68 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 19 |
| 282 | 166.69 | wind | 3 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 283 | 166.70 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 287 | 166.72 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 293 | 166.75 | humidity | 80 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 296 | 166.76 | radiation | 1 | 4320 | < th | dose independent | rect. | 12 | 9 |
| 307 | 166.78 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 311 | 166.81 | wind | 5 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 320 | 166.82 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 332 | 166.85 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 336 | 166.86 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 18 |
| 344 | 166.88 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 21 |
| 345 | 166.88 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 21 |
| 352 | 166.90 | radiation | 1 | 4320 | < th | dose independent | rect. | 9 | 15 |
| 357 | 166.91 | radiation | 1 | 4320 | < th | dose independent | rect. | 9 | 12 |
| 385 | 166.98 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 390 | 167.00 | radiation | 1 | 4320 | < th | dose independent | sin | 17 | NA |
| 403 | 167.03 | wind | 1 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 406 | 167.05 | radiation | 1 | 4320 | > th | dose independent | rect. | 12 | 7 |
| 421 | 167.07 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 9 |
| 425 | 167.07 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 426 | 167.07 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 435 | 167.10 | humidity | 70 | 43200 | > th | dose dependent | rect. | 17 | 12 |
| 467 | 167.14 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 19 |
| 469 | 167.15 | radiation | 1 | 4320 | > th | dose independent | rect. | 9 | 10 |
| 519 | 167.28 | humidity | 70 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 544 | 167.33 | radiation | 1 | 4320 | > th | dose independent | sin | 17 | NA |
| 569 | 167.38 | humidity | 80 | 43200 | < th | dose independent | rect. | 24 | 15 |
| 605 | 167.51 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 607 | 167.52 | humidity | 80 | 43200 | > th | dose independent | no | NA | NA |
| 610 | 167.52 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 613 | 167.52 | temperature | 10 | 30 | > th | dose dependent | rect. | 21 | 22 |
| 614 | 167.53 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 633 | 167.60 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 15 |
| 643 | 167.67 | wind | 1 | 43200 | < th | dose dependent | sin | 20 | NA |
| 666 | 167.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 704 | 167.83 | humidity | 80 | 43200 | > th | dose independent | sin | 4 | NA |
| 716 | 167.85 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 7 |
| 734 | 167.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 22 |
| 737 | 167.91 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 23 |
| 742 | 167.93 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 745 | 167.94 | humidity | 70 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 751 | 167.96 | humidity | 80 | 43200 | < th | dose independent | sin | 4 | NA |
| 814 | 168.09 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 2 |
| 883 | 168.30 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 23 |
| 961 | 168.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 5 |
| 977 | 168.50 | humidity | 80 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 985 | 168.53 | wind | 3 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 996 | 168.55 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 10 |