BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0516300 Os07g0516300|AK102726
(196 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204 60 9e-10
AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202 59 1e-09
AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149 59 2e-09
AT5G60680.1 | chr5:24386247-24386738 FORWARD LENGTH=164 58 4e-09
AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169 57 4e-09
AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184 57 7e-09
AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158 57 8e-09
AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244 53 1e-07
AT5G03230.1 | chr5:769636-770136 FORWARD LENGTH=167 52 2e-07
AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137 51 4e-07
AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141 49 1e-06
AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163 48 3e-06
>AT1G61930.1 | chr1:22893218-22893829 FORWARD LENGTH=204
Length = 203
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 38/53 (71%), Gaps = 9/53 (16%)
Query: 153 VPPHVYLARRQAR---------SSVVEGVGRTLKGRDASRVRDAVWSRTGFDG 196
+PPH YLA+ QAR +SV +GVGRTLKGR+ RVRDA+WS+TGF G
Sbjct: 151 MPPHEYLAKSQARRSRKIGGGGASVFDGVGRTLKGRELRRVRDAIWSQTGFYG 203
>AT1G11700.1 | chr1:3945852-3946457 FORWARD LENGTH=202
Length = 201
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 36/52 (69%), Gaps = 8/52 (15%)
Query: 153 VPPHVYLARRQAR--------SSVVEGVGRTLKGRDASRVRDAVWSRTGFDG 196
+PPH YLA+ Q R SV EGVGRTLKGR+ RVRDA+WS+TGF G
Sbjct: 150 MPPHEYLAKSQQRRSRKSGGGGSVFEGVGRTLKGRELRRVRDAIWSQTGFYG 201
>AT3G45210.1 | chr3:16557482-16557928 REVERSE LENGTH=149
Length = 148
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%), Gaps = 1/43 (2%)
Query: 153 VPPHVYLAR-RQARSSVVEGVGRTLKGRDASRVRDAVWSRTGF 194
+PPH YLA+ R A SV EG+GRTLKGRD SRVR+A+ +TGF
Sbjct: 104 LPPHEYLAKTRMASFSVHEGIGRTLKGRDMSRVRNAILEKTGF 146
>AT5G60680.1 | chr5:24386247-24386738 FORWARD LENGTH=164
Length = 163
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 152 WVPPHVYLAR-RQARSSVVEGVGRTLKGRDASRVRDAVWSRTGF 194
W+PPH +LA+ R A SV EGVGRTLKGRD SRVR+A++ + GF
Sbjct: 118 WLPPHEFLAKTRMASFSVHEGVGRTLKGRDLSRVRNAIFEKFGF 161
>AT4G04630.1 | chr4:2332163-2332669 REVERSE LENGTH=169
Length = 168
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 37/47 (78%), Gaps = 5/47 (10%)
Query: 153 VPPHVYLARRQARS-----SVVEGVGRTLKGRDASRVRDAVWSRTGF 194
VPPH ++AR+ AR+ S+ EGVGRTLKGRD S+VR+AV S+TGF
Sbjct: 120 VPPHEWVARKLARTQISSFSMCEGVGRTLKGRDLSKVRNAVLSKTGF 166
>AT4G21930.1 | chr4:11639893-11640444 FORWARD LENGTH=184
Length = 183
Score = 57.0 bits (136), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/48 (66%), Positives = 34/48 (70%), Gaps = 4/48 (8%)
Query: 153 VPPHVYLARRQAR----SSVVEGVGRTLKGRDASRVRDAVWSRTGFDG 196
VPPH Y+A R SSV GVGRTLKGRD RVRDAVWS+TGF G
Sbjct: 136 VPPHEYVAARSRNGDGGSSVFLGVGRTLKGRDMRRVRDAVWSQTGFYG 183
>AT4G21970.1 | chr4:11653633-11654106 FORWARD LENGTH=158
Length = 157
Score = 56.6 bits (135), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 35/47 (74%), Gaps = 5/47 (10%)
Query: 153 VPPHVYLARRQARS-----SVVEGVGRTLKGRDASRVRDAVWSRTGF 194
VPPH +A+R AR+ S+ EG+GRTLKGRD S+ R+AV +RTGF
Sbjct: 97 VPPHELVAKRLARTQISSFSMCEGIGRTLKGRDLSKTRNAVLTRTGF 143
>AT3G15040.1 | chr3:5065445-5066176 REVERSE LENGTH=244
Length = 243
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 34/48 (70%), Gaps = 5/48 (10%)
Query: 152 WVPPHVYLARRQARSS-----VVEGVGRTLKGRDASRVRDAVWSRTGF 194
+PPH +AR A+SS V+EG GRTLKGRD +VR+AV+ RTGF
Sbjct: 194 MLPPHEIVARSLAQSSLLSCSVLEGAGRTLKGRDLRQVRNAVFRRTGF 241
>AT5G03230.1 | chr5:769636-770136 FORWARD LENGTH=167
Length = 166
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 152 WVPPHVYLARRQARSSVV-EGVGRTLKGRDASRVRDAVWSRTGF 194
+PPH YLARR+ S V EG+G T KGRD R+R+A+W + GF
Sbjct: 121 MIPPHEYLARRRGSSFTVHEGIGGTAKGRDLRRLRNAIWEKIGF 164
>AT2G34340.1 | chr2:14489032-14489442 REVERSE LENGTH=137
Length = 136
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 152 WVPPHVYLARR----QARSSVVEGVGRTLKGRDASRVRDAVWSRTGF 194
+PPH+ + RR Q SV G GRTLKGRD SRVR++V TGF
Sbjct: 87 MIPPHIMIGRRIQGGQMAFSVCSGSGRTLKGRDLSRVRNSVLRLTGF 133
>AT1G29640.1 | chr1:10355959-10356381 REVERSE LENGTH=141
Length = 140
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 152 WVPPHVYLARR----QARSSVVEGVGRTLKGRDASRVRDAVWSRTGF 194
+PPH+ + RR Q SV G GRTLKGRD SRVR++V TGF
Sbjct: 91 MIPPHLIVGRRMEGGQMAFSVCTGNGRTLKGRDLSRVRNSVLKLTGF 137
>AT2G28400.1 | chr2:12148513-12149001 REVERSE LENGTH=163
Length = 162
Score = 47.8 bits (112), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 153 VPPHVYLA-RRQARSSVVEGVGRTLKGRDASRVRDAVWSRTGFD 195
VPPH LA RR A SV EG GRTLKGRD SRVR+ ++ G +
Sbjct: 118 VPPHELLANRRMASFSVHEGAGRTLKGRDLSRVRNTIFKIRGIE 161
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,960,262
Number of extensions: 36268
Number of successful extensions: 99
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 13
Length of query: 196
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 103
Effective length of database: 8,556,881
Effective search space: 881358743
Effective search space used: 881358743
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)