Os07g0511900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0511900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.56 | 0.251 | 10.5 | 0.966 | 0.288 | 0.492 | -0.536 | 0.115 | 0.554 | 2.22 | 78.51 | 303 | -- | -- |
| 28.59 | 0.249 | 10.5 | 0.974 | 0.282 | 0.502 | -0.488 | -- | 0.554 | 2.11 | 77.92 | 306 | -- | -- |
| 29.38 | 0.252 | 10.5 | 1 | 0.298 | 0.49 | -- | -0.152 | 0.556 | 2.04 | 77.59 | 320 | -- | -- |
| 29.45 | 0.253 | 10.5 | 0.991 | 0.307 | 0.486 | -- | -- | 0.556 | 2.03 | 78 | 329 | -- | -- |
| 30.81 | 0.259 | 10.5 | 1.02 | -- | 0.645 | -- | -0.207 | 0.569 | -- | 74 | 185 | -- | -- |
| 34.14 | 0.274 | 10.5 | 1.03 | 0.594 | -- | -0.363 | -- | 0.501 | 3.62 | -- | -- | -- | -- |
| 34.54 | 0.275 | 10.5 | 1.04 | 0.592 | -- | -- | -- | 0.503 | 3.65 | -- | -- | -- | -- |
| 30.96 | 0.259 | 10.5 | 1.01 | -- | 0.639 | -- | -- | 0.567 | -- | 74 | 185 | -- | -- |
| 54.07 | 0.342 | 10.6 | -- | 0.366 | 0.65 | -- | -- | 0.493 | 1.46 | 84.55 | 377 | -- | -- |
| 54 | 0.343 | 10.5 | 1.07 | -- | -- | -- | -- | 0.519 | -- | -- | -- | -- | -- |
| 63.08 | 0.372 | 10.6 | -- | 0.612 | -- | -- | -- | 0.387 | 3.63 | -- | -- | -- | -- |
| 57.18 | 0.352 | 10.6 | -- | -- | 0.717 | -- | -- | 0.475 | -- | 78.28 | 239 | -- | -- |
| 83.94 | 0.428 | 10.6 | -- | -- | -- | -- | -- | 0.4 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.15 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 1 | 22 |
| 6 | 28.38 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 33 | 28.61 | humidity | 90.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 37 | 28.63 | humidity | 80.0 | 270 | > th | dose dependent | no | NA | NA |
| 48 | 28.70 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 51 | 28.72 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 58 | 28.76 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 4 | 18 |
| 67 | 28.81 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 73 | 28.84 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 75 | 28.86 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 96 | 28.96 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 109 | 29.03 | humidity | 80.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 129 | 29.13 | humidity | 90.0 | 270 | > th | dose independent | rect. | 23 | 23 |
| 174 | 29.26 | humidity | 90.0 | 270 | < th | dose independent | rect. | 16 | 23 |
| 182 | 29.27 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 2 | 12 |
| 186 | 29.28 | humidity | 80.0 | 270 | > th | dose independent | sin | 8 | NA |
| 202 | 29.31 | humidity | 90.0 | 720 | > th | dose dependent | sin | 23 | NA |
| 219 | 29.33 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 229 | 29.34 | humidity | 90.0 | 270 | > th | dose independent | rect. | 16 | 22 |
| 251 | 29.37 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 255 | 29.37 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 263 | 29.38 | humidity | 90.0 | 270 | > th | dose independent | no | NA | NA |
| 265 | 29.38 | humidity | 90.0 | 270 | > th | dose independent | rect. | 13 | 22 |
| 288 | 29.41 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 302 | 29.42 | humidity | 90.0 | 270 | > th | dose independent | rect. | 16 | 19 |
| 329 | 29.44 | humidity | 90.0 | 270 | > th | dose independent | rect. | 19 | 23 |
| 389 | 29.50 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 4 |
| 413 | 29.53 | humidity | 90.0 | 270 | < th | dose independent | rect. | 19 | 23 |
| 429 | 29.55 | humidity | 90.0 | 270 | < th | dose independent | rect. | 3 | 23 |
| 453 | 29.58 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 464 | 29.60 | humidity | 90.0 | 270 | < th | dose independent | sin | 5 | NA |
| 486 | 29.62 | humidity | 90.0 | 270 | < th | dose independent | no | NA | NA |
| 489 | 29.62 | humidity | 90.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 514 | 29.64 | humidity | 90.0 | 270 | > th | dose independent | rect. | 7 | 23 |
| 517 | 29.64 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 1 | 14 |
| 540 | 29.66 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 551 | 29.67 | humidity | 80.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 573 | 29.69 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 14 |
| 669 | 29.77 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 12 |
| 672 | 29.77 | humidity | 90.0 | 270 | < th | dose independent | rect. | 1 | 23 |
| 675 | 29.77 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 720 | 29.80 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 23 | 20 |
| 759 | 29.83 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 764 | 29.83 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 786 | 29.85 | temperature | 20.0 | 4320 | > th | dose independent | sin | 18 | NA |
| 788 | 29.85 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 794 | 29.85 | temperature | 20.0 | 270 | > th | dose independent | rect. | 2 | 20 |
| 795 | 29.85 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 802 | 29.86 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 811 | 29.86 | humidity | 80.0 | 1440 | > th | dose dependent | sin | 2 | NA |
| 856 | 29.89 | temperature | 20.0 | 4320 | < th | dose independent | sin | 18 | NA |
| 862 | 29.89 | temperature | 20.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 873 | 29.90 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 893 | 29.91 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 904 | 29.92 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 12 |
| 910 | 29.92 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 975 | 29.95 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 977 | 29.95 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 991 | 29.96 | humidity | 80.0 | 1440 | < th | dose independent | sin | 3 | NA |