BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0511900 Os07g0511900|AK060218
         (320 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55040.1  | chr5:22327727-22331703 REVERSE LENGTH=917           73   2e-13

>AT5G55040.1 | chr5:22327727-22331703 REVERSE LENGTH=917
          Length = 916

 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 88/178 (49%), Gaps = 28/178 (15%)

Query: 170 AVRENQSIPSAPVAQSWISFGASSESKPTIVSPTFHDSNSGWKMPFAN----------AR 219
           A  E+    S   A++W+S GA   +K T  + +   S+        N           +
Sbjct: 740 ARSEDSGNASVAAARAWMSIGAGGNNKQTFENASNPKSSQISAESLYNPSREHFHQQAFK 799

Query: 220 PDEAKMTAV-PQ--------FFRQPVQMVRES---PGQNKGLVIFPQLV--QTDFSRSQG 265
           P +A+ T   PQ        F  QPV  +      P QN   ++FPQ+    +DFSR   
Sbjct: 800 PRDAEETQFHPQRNGFPFQTFVHQPVHGMMNGGYQPFQNNRPIVFPQMAAPTSDFSRFHV 859

Query: 266 QPQWQGLVPP---MQQKPNKDMLRPDLNIGFPSPGSPPARQSSGINLEAQQPDLALQL 320
           Q QW+G + P   ++Q+     L PDLNIG  SP SP A+QSSG+ +++QQPDLALQL
Sbjct: 860 QSQWRGGITPQVQLKQRQENFNLPPDLNIGVHSPDSP-AKQSSGVRVDSQQPDLALQL 916



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.127    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,536,182
Number of extensions: 339243
Number of successful extensions: 667
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 221
Effective length of database: 8,392,385
Effective search space: 1854717085
Effective search space used: 1854717085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 112 (47.8 bits)