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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0510900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cupredoxin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.72 (0.0552) R2 : 0.44
β1 : 2.2 (0.212) R2dD : 0.157 R2D : 0.0917
β2 : 2.14 (0.327) R2dC : 0.335 R2C : 0.29
β3 : -0.0973 (0.257) R2dE : 0.00111 R2E : -0.0364
β4 : 8.87 (1.41) R2dD*C : 0.387 R2D*C : -0.324
β5 : -6.84 (1.18) R2dD*E : 0.331 R2D*E : -0.363
γ1 : 0.28 (0.118) R2dN8 : 0.00962 R2N8 : -0.00675
σ : 1.02
deviance : 474.26
__
_____
C
peak time of C : 1.16
E
wheather : radiation
threshold : 0.14
memory length : 94
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
474.26 1.02 4.72 2.2 2.14 -0.0973 8.87 -6.84 0.28 1.16 0.14 94 -- --
509.8 1.06 4.76 1.8 1.93 0.05 1.21 -- 0.183 1.24 0.14 94 -- --
515.72 1.07 4.77 1.76 1.97 0.00836 -- -0.0831 0.177 1.14 0.1809 1327 -- --
503.79 1.05 4.76 1.82 1.44 0.567 -- -- 0.174 1.48 10.95 16 -- --
585.37 1.13 4.73 1.85 -- 1.25 -- -0.132 0.246 -- 1.1 1824 -- --
509.86 1.06 4.76 1.8 1.98 -- 1.2 -- 0.183 1.19 -- -- -- --
515.77 1.06 4.77 1.76 1.98 -- -- -- 0.177 1.13 -- -- -- --
499.8 1.04 4.76 1.59 -- 1.7 -- -- 0.136 -- 7.281 197 -- --
578.36 1.12 4.76 -- 1.17 0.838 -- -- 0.166 1.67 8.86 27 -- --
758.62 1.29 4.74 1.83 -- -- -- -- 0.216 -- -- -- -- --
597.16 1.14 4.81 -- 2.01 -- -- -- -0.0188 1.16 -- -- -- --
576.51 1.12 4.78 -- -- 1.78 -- -- 0.0224 -- 7.36 197 -- --
847.24 1.36 4.78 -- -- -- -- -- 0.013 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 460.53 temperature 30.0 90 < th dose dependent rect. 3 6
3 463.72 temperature 30.0 270 < th dose dependent rect. 1 7
5 464.31 wind 5.0 30 < th dose independent rect. 3 6
7 465.11 temperature 30.0 90 < th dose dependent rect. 3 8
8 465.20 wind 1.0 270 > th dose independent rect. 1 7
9 465.49 precipitation 0.1 10 < th dose independent rect. 3 6
10 465.49 precipitation 0.1 10 < th dose dependent rect. 3 6
16 465.96 radiation 30.0 30 < th dose independent rect. 3 8
18 466.56 radiation 30.0 90 < th dose independent rect. 3 6
22 467.15 radiation 10.0 270 < th dose dependent rect. 3 11
23 467.36 wind 1.0 30 > th dose independent rect. 3 6
30 468.09 temperature 10.0 30 > th dose independent rect. 3 6
32 468.09 temperature 30.0 30 < th dose independent rect. 3 6
33 468.09 humidity 50.0 30 > th dose independent rect. 3 6
35 468.09 atmosphere 995.0 30 > th dose independent rect. 3 6
36 468.09 atmosphere 1015.0 30 < th dose independent rect. 3 6
38 468.09 temperature 10.0 30 > th dose independent rect. 9 18
39 468.10 radiation 1.0 270 > th dose independent rect. 6 10
41 468.12 temperature 30.0 270 < th dose dependent rect. 3 2
60 468.80 radiation 1.0 270 < th dose independent rect. 3 13
62 468.97 radiation 1.0 270 > th dose independent sin 2 NA
65 469.14 temperature 10.0 270 > th dose dependent rect. 21 15
67 469.18 radiation 10.0 270 < th dose dependent rect. 3 6
68 469.25 wind 9.0 30 < th dose independent rect. 9 18
73 469.49 radiation 10.0 270 < th dose independent rect. 1 8
76 469.60 wind 1.0 270 > th dose independent rect. 1 20
77 469.63 radiation 10.0 270 < th dose dependent sin 4 NA
89 469.97 temperature 20.0 270 > th dose independent rect. 12 9
96 470.09 radiation 30.0 270 < th dose dependent rect. 1 8
115 470.49 wind 5.0 270 < th dose independent rect. 1 7
121 470.56 atmosphere 995.0 30 > th dose independent rect. 9 18
123 470.61 precipitation 0.1 10 < th dose independent rect. 9 18
124 470.61 precipitation 0.1 10 < th dose dependent rect. 9 18
128 470.73 humidity 90.0 270 < th dose independent rect. 9 1
147 471.18 temperature 20.0 270 > th dose independent rect. 21 15
159 471.50 radiation 40.0 90 < th dose dependent rect. 3 7
163 471.66 humidity 90.0 30 < th dose independent rect. 9 5
179 471.98 temperature 10.0 1440 > th dose independent rect. 4 6
182 471.98 atmosphere 995.0 1440 > th dose independent rect. 4 6
183 471.98 atmosphere 1015.0 1440 < th dose independent rect. 4 6
184 471.98 temperature 10.0 1440 > th dose independent rect. 10 18
192 472.14 atmosphere 995.0 30 > th dose dependent rect. 3 6
195 472.23 wind 1.0 270 > th dose independent rect. 14 17
208 472.39 atmosphere 1015.0 30 < th dose independent rect. 9 18
217 472.53 humidity 90.0 270 < th dose independent rect. 8 3
218 472.57 radiation 1.0 270 < th dose independent sin 2 NA
222 472.61 wind 9.0 270 < th dose independent rect. 12 9
234 472.65 humidity 90.0 270 < th dose independent rect. 6 8
243 472.89 precipitation 0.1 270 < th dose independent rect. 12 9
245 472.89 precipitation 0.1 270 < th dose dependent rect. 12 9
252 473.01 wind 1.0 270 > th dose independent rect. 12 9
263 473.21 radiation 10.0 270 < th dose independent rect. 1 12
274 473.37 precipitation 0.1 270 < th dose independent rect. 1 7
276 473.37 precipitation 0.1 270 < th dose dependent rect. 1 7
295 473.56 wind 9.0 30 < th dose dependent rect. 3 6
300 473.59 atmosphere 1010.0 270 < th dose independent rect. 12 9
323 473.77 temperature 10.0 270 > th dose independent rect. 21 15
324 473.77 atmosphere 995.0 270 > th dose independent rect. 21 15
344 473.96 wind 9.0 270 < th dose independent rect. 21 15
345 473.97 wind 1.0 270 > th dose independent rect. 12 20
353 474.06 temperature 10.0 30 > th dose dependent rect. 9 18
354 474.07 temperature 30.0 90 < th dose dependent rect. 3 14
356 474.09 temperature 25.0 270 < th dose independent rect. 1 7
360 474.10 radiation 1.0 90 < th dose dependent rect. 3 18
364 474.14 radiation 10.0 270 < th dose independent sin 6 NA
400 474.44 humidity 70.0 10 > th dose independent rect. 3 13
409 474.53 temperature 10.0 270 > th dose independent rect. 1 7
412 474.53 humidity 50.0 270 > th dose independent rect. 1 7
414 474.53 atmosphere 995.0 270 > th dose independent rect. 1 7
439 474.81 precipitation 0.1 270 < th dose independent rect. 21 15
440 474.81 precipitation 0.1 270 < th dose dependent rect. 21 15
453 474.95 radiation 40.0 90 < th dose dependent rect. 15 18
460 475.06 humidity 90.0 10 < th dose dependent rect. 9 5
465 475.10 radiation 1.0 90 < th dose independent sin 23 NA
469 475.17 radiation 1.0 90 > th dose independent sin 23 NA
475 475.20 wind 1.0 270 > th dose independent rect. 3 3
482 475.31 atmosphere 1000.0 90 > th dose independent rect. 3 18
493 475.37 humidity 60.0 90 > th dose dependent rect. 3 13
519 475.55 radiation 1.0 90 < th dose independent rect. 3 18
520 475.55 precipitation 0.1 90 < th dose independent rect. 3 18
521 475.55 precipitation 0.1 90 < th dose dependent rect. 3 18
530 475.61 temperature 20.0 270 > th dose independent rect. 6 9
552 475.78 wind 5.0 270 < th dose independent rect. 3 3
570 475.89 temperature 10.0 270 > th dose dependent rect. 12 9
592 476.05 temperature 10.0 10 > th dose dependent rect. 9 5
597 476.09 humidity 70.0 10 > th dose independent rect. 3 11
606 476.15 precipitation 0.1 10 < th dose independent rect. 14 19
607 476.15 precipitation 0.1 10 < th dose dependent rect. 14 19
614 476.18 precipitation 0.1 270 < th dose independent rect. 15 15
616 476.18 precipitation 0.1 270 < th dose dependent rect. 15 15
617 476.20 humidity 50.0 270 > th dose independent rect. 21 14
626 476.25 temperature 10.0 10 > th dose dependent rect. 22 16
627 476.27 atmosphere 995.0 270 > th dose independent rect. 12 9
630 476.29 radiation 40.0 90 < th dose dependent rect. 13 20
661 476.44 temperature 25.0 270 < th dose independent rect. 3 3
670 476.52 temperature 20.0 10 > th dose independent rect. 9 5
687 476.61 precipitation 0.1 270 < th dose independent rect. 3 3
688 476.61 precipitation 0.1 270 < th dose dependent rect. 3 3
697 476.65 temperature 30.0 30 < th dose dependent rect. 3 18
698 476.66 radiation 1.0 10 > th dose independent rect. 9 7
702 476.68 wind 1.0 30 > th dose independent rect. 14 19
716 476.79 humidity 90.0 270 < th dose independent rect. 12 8
738 477.01 wind 9.0 90 < th dose independent rect. 3 18
759 477.11 humidity 70.0 10 > th dose independent rect. 3 18
761 477.12 temperature 10.0 90 > th dose independent rect. 21 6
762 477.12 temperature 30.0 90 < th dose independent rect. 21 6
763 477.12 humidity 50.0 90 > th dose independent rect. 21 6
766 477.12 atmosphere 995.0 90 > th dose independent rect. 21 6
767 477.12 radiation 1.0 90 < th dose independent rect. 21 6
773 477.12 temperature 10.0 90 > th dose independent rect. 3 18
774 477.12 atmosphere 1015.0 90 < th dose independent rect. 3 18
776 477.12 radiation 1.0 90 < th dose dependent rect. 21 6
786 477.18 humidity 50.0 90 > th dose dependent rect. 3 6
793 477.22 humidity 50.0 90 > th dose dependent rect. 3 8
797 477.24 precipitation 0.1 90 < th dose independent rect. 21 6
799 477.24 precipitation 0.1 90 < th dose dependent rect. 21 6
810 477.32 wind 9.0 90 < th dose independent rect. 21 6
828 477.45 precipitation 0.1 270 < th dose independent rect. 6 9
829 477.45 precipitation 0.1 270 < th dose dependent rect. 6 9
849 477.54 temperature 15.0 10 > th dose independent rect. 14 19
854 477.56 wind 7.0 30 < th dose independent rect. 14 19
856 477.57 atmosphere 995.0 270 > th dose dependent rect. 1 7
861 477.60 wind 9.0 270 < th dose independent rect. 15 15
872 477.65 wind 1.0 30 > th dose independent rect. 3 19
876 477.67 temperature 20.0 10 < th dose independent rect. 3 6
915 477.80 humidity 50.0 30 > th dose dependent rect. 3 18
917 477.81 temperature 15.0 270 > th dose independent rect. 15 15
921 477.84 radiation 1.0 30 > th dose independent rect. 9 5
967 478.01 atmosphere 1010.0 270 < th dose independent rect. 3 3
992 478.12 radiation 1.0 30 < th dose dependent rect. 3 23