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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0501100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chalcone synthase 2 (EC 2.3.1.74) (Naringenin-chalcone synthase 2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.97 (0.0263) R2 : 0.0203
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.17 (0.0554) R2dN8 : 0.0262 R2N8 : 0.0203
σ : 0.495
deviance : 112.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.16 0.48 3.01 -0.128 0.0574 2.54 -0.107 5.6 0.161 12.5 17.31 717 -- --
110.1 0.489 2.95 -0.022 0.0846 0.339 0.124 -- 0.223 9.55 24.73 1511 -- --
104.01 0.475 3.01 -0.126 0.0682 3.04 -- 6.67 0.155 12.9 16.91 752 -- --
109.78 0.488 2.95 -0.012 0.101 0.353 -- -- 0.226 12.6 23.3 1894 -- --
104.26 0.476 3.01 -0.115 -- 3.12 -- 6.82 0.159 -- 16.95 756 -- --
111.23 0.494 2.97 -0.135 0.107 -- 0.198 -- 0.156 12.4 -- -- -- --
111.4 0.494 2.97 -0.128 0.107 -- -- -- 0.157 12.4 -- -- -- --
110.31 0.489 2.95 -0.0053 -- 0.318 -- -- 0.237 -- 25.1 2204 -- --
109.78 0.488 2.95 -- 0.101 0.359 -- -- 0.226 12.7 23.28 1895 -- --
112.12 0.495 2.97 -0.131 -- -- -- -- 0.156 -- -- -- -- --
111.83 0.495 2.97 -- 0.108 -- -- -- 0.172 12.5 -- -- -- --
110.31 0.489 2.95 -- -- 0.321 -- -- 0.237 -- 25.1 2206 -- --
112.57 0.495 2.97 -- -- -- -- -- 0.17 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.70 temperature 20.0 1440 < th dose independent rect. 10 6
15 103.94 temperature 20.0 1440 < th dose dependent rect. 12 3
18 103.99 temperature 20.0 1440 > th dose independent rect. 13 5
22 104.02 temperature 20.0 1440 > th dose independent rect. 10 8
48 104.29 wind 9.0 4320 > th dose independent rect. 3 1
81 104.29 wind 9.0 4320 > th dose dependent rect. 3 1
118 104.41 temperature 20.0 1440 < th dose dependent rect. 17 1
122 104.64 temperature 20.0 720 < th dose dependent rect. 7 1
123 104.66 temperature 20.0 1440 < th dose dependent rect. 9 11
129 104.74 wind 1.0 270 < th dose dependent rect. 7 1
131 104.77 temperature 20.0 1440 < th dose dependent rect. 19 1
142 104.94 humidity 90.0 1440 > th dose independent rect. 12 1
148 104.98 humidity 90.0 1440 > th dose dependent rect. 12 1
154 105.05 temperature 20.0 1440 < th dose dependent rect. 7 14
159 105.13 humidity 90.0 1440 < th dose independent rect. 12 1
170 105.30 wind 1.0 720 < th dose independent rect. 7 1
178 105.36 temperature 20.0 1440 < th dose dependent rect. 7 16
179 105.37 wind 1.0 4320 > th dose independent rect. 15 1
195 105.50 temperature 20.0 1440 < th dose dependent sin 21 NA
203 105.58 wind 9.0 4320 < th dose independent rect. 3 1
204 105.58 wind 9.0 14400 < th dose independent rect. 5 3
207 105.59 wind 9.0 43200 > th dose independent rect. 2 2
214 105.63 wind 1.0 4320 < th dose independent rect. 15 1
221 105.67 temperature 20.0 1440 < th dose dependent rect. 16 8
232 105.69 temperature 20.0 1440 < th dose dependent rect. 19 5
234 105.70 precipitation 0.1 10 > th dose independent rect. 1 1
246 105.70 precipitation 0.1 10 > th dose dependent rect. 1 1
263 105.75 temperature 20.0 1440 < th dose dependent rect. 22 1
264 105.75 wind 9.0 43200 > th dose dependent rect. 2 2
267 105.77 wind 1.0 4320 < th dose dependent rect. 15 1
295 105.83 wind 5.0 4320 > th dose dependent rect. 23 10
300 105.85 wind 5.0 4320 > th dose dependent rect. 21 11
326 105.89 wind 1.0 43200 < th dose dependent rect. 14 1
332 105.92 wind 5.0 4320 > th dose independent rect. 24 8
333 105.92 wind 5.0 4320 > th dose dependent rect. 24 6
340 105.94 wind 1.0 43200 < th dose dependent rect. 13 3
350 105.97 wind 5.0 4320 < th dose independent rect. 24 6
360 105.98 wind 1.0 30 < th dose independent rect. 10 1
361 105.98 temperature 10.0 1440 > th dose independent rect. 11 1
365 105.98 atmosphere 995.0 1440 > th dose independent rect. 11 1
368 105.98 precipitation 0.1 1440 < th dose independent rect. 11 1
369 105.98 temperature 10.0 1440 > th dose independent rect. 12 23
372 105.98 wind 1.0 30 < th dose dependent rect. 10 1
373 105.98 radiation 1.0 4320 < th dose dependent rect. 21 1
374 105.98 precipitation 0.1 1440 < th dose dependent rect. 11 1
377 105.99 wind 5.0 4320 < th dose independent rect. 24 8
380 106.00 wind 9.0 4320 < th dose independent rect. 7 1
393 106.02 temperature 25.0 30 > th dose dependent rect. 10 1
399 106.05 wind 7.0 4320 < th dose independent rect. 5 1
400 106.05 humidity 70.0 30 < th dose independent rect. 10 1
405 106.06 wind 1.0 43200 < th dose independent rect. 14 1
410 106.07 temperature 25.0 30 > th dose independent rect. 10 1
414 106.07 radiation 1.0 43200 < th dose dependent rect. 21 1
419 106.08 wind 5.0 4320 > th dose independent rect. 21 11
421 106.08 wind 1.0 4320 < th dose dependent rect. 14 3
429 106.11 wind 1.0 43200 > th dose independent rect. 20 1
441 106.13 radiation 20.0 30 > th dose independent rect. 10 1
445 106.14 atmosphere 1010.0 30 < th dose independent rect. 10 1
449 106.15 atmosphere 1005.0 30 > th dose independent rect. 10 1
456 106.16 humidity 80.0 30 < th dose dependent rect. 10 1
464 106.19 wind 5.0 4320 < th dose independent rect. 21 11
467 106.20 temperature 20.0 720 < th dose dependent rect. 24 1
468 106.20 atmosphere 1000.0 30 > th dose dependent rect. 10 1
469 106.20 wind 5.0 4320 > th dose dependent rect. 1 2
481 106.21 wind 5.0 30 < th dose dependent rect. 10 1
490 106.23 temperature 20.0 720 < th dose independent rect. 7 1
499 106.24 humidity 60.0 30 > th dose independent rect. 10 1
509 106.25 radiation 40.0 30 < th dose independent rect. 10 1
512 106.25 temperature 20.0 720 < th dose independent rect. 7 7
528 106.27 temperature 10.0 30 > th dose independent rect. 10 1
530 106.27 temperature 30.0 30 < th dose independent rect. 10 1
532 106.27 humidity 90.0 30 < th dose independent rect. 10 1
536 106.27 precipitation 0.1 30 < th dose independent rect. 10 1
539 106.27 temperature 20.0 720 < th dose independent rect. 7 4
543 106.27 temperature 10.0 30 > th dose independent rect. 11 23
544 106.27 precipitation 0.1 30 < th dose dependent rect. 10 1
553 106.28 temperature 20.0 720 > th dose independent rect. 7 8
561 106.29 wind 1.0 30 > th dose independent rect. 10 1
564 106.29 wind 9.0 43200 > th dose independent rect. 2 5
603 106.33 radiation 1.0 30 > th dose dependent rect. 10 1
623 106.35 wind 1.0 14400 < th dose dependent rect. 13 10
660 106.39 wind 1.0 4320 > th dose independent rect. 14 3
684 106.41 wind 1.0 43200 > th dose independent rect. 17 12
761 106.48 wind 9.0 43200 > th dose dependent rect. 2 4
782 106.50 wind 3.0 10 < th dose dependent rect. 12 1
832 106.55 wind 9.0 43200 > th dose dependent rect. 24 6
918 106.59 atmosphere 1015.0 30 < th dose dependent rect. 10 1
954 106.61 humidity 90.0 43200 < th dose independent rect. 3 1
962 106.61 radiation 40.0 30 < th dose dependent rect. 10 1
975 106.61 wind 1.0 720 < th dose dependent rect. 6 16