Os07g0497400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transglutaminase-like domain containing protein.
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Os07g0497400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transglutaminase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.82 | 0.214 | 11.2 | -0.464 | 0.584 | -0.503 | 0.298 | -1.31 | 0.278 | 3.92 | 24.95 | 42 | -- | -- |
| 21.39 | 0.215 | 11.2 | -0.309 | 0.565 | -0.611 | 0.501 | -- | 0.328 | 3.95 | 24.7 | 39 | -- | -- |
| 21.03 | 0.214 | 11.2 | -0.503 | 0.582 | -0.493 | -- | -1.6 | 0.268 | 3.91 | 24.94 | 41 | -- | -- |
| 22.1 | 0.219 | 11.2 | -0.308 | 0.553 | -0.643 | -- | -- | 0.328 | 3.97 | 24.7 | 41 | -- | -- |
| 32.23 | 0.264 | 11.2 | -0.318 | -- | -1.03 | -- | -0.802 | 0.364 | -- | 24.28 | 76 | -- | -- |
| 26.99 | 0.244 | 11.2 | -0.403 | 0.804 | -- | 0.72 | -- | 0.273 | 3.74 | -- | -- | -- | -- |
| 28.54 | 0.25 | 11.2 | -0.414 | 0.808 | -- | -- | -- | 0.269 | 3.75 | -- | -- | -- | -- |
| 32.53 | 0.266 | 11.1 | -0.207 | -- | -1.1 | -- | -- | 0.405 | -- | 24.23 | 76 | -- | -- |
| 24.53 | 0.231 | 11.1 | -- | 0.511 | -0.706 | -- | -- | 0.375 | 3.93 | 24.45 | 66 | -- | -- |
| 64.63 | 0.376 | 11.2 | -0.38 | -- | -- | -- | -- | 0.29 | -- | -- | -- | -- | -- |
| 33.06 | 0.269 | 11.2 | -- | 0.8 | -- | -- | -- | 0.315 | 3.76 | -- | -- | -- | -- |
| 33.63 | 0.27 | 11.1 | -- | -- | -1.13 | -- | -- | 0.432 | -- | 24.2 | 76 | -- | -- |
| 68.45 | 0.386 | 11.2 | -- | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.52 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 2 | 20.54 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 20 |
| 5 | 20.56 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 18 |
| 16 | 20.66 | temperature | 25 | 90 | > th | dose dependent | sin | 23 | NA |
| 20 | 20.70 | temperature | 25 | 30 | > th | dose dependent | rect. | 8 | 12 |
| 34 | 20.73 | temperature | 25 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 35 | 20.73 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 40 | 20.74 | temperature | 25 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 96 | 20.85 | temperature | 25 | 30 | > th | dose dependent | no | NA | NA |
| 101 | 20.85 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 178 | 20.94 | temperature | 25 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 200 | 20.98 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 206 | 20.98 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 433 | 21.29 | temperature | 10 | 90 | > th | dose dependent | sin | 21 | NA |
| 483 | 21.40 | temperature | 30 | 90 | < th | dose dependent | sin | 22 | NA |
| 516 | 21.45 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 517 | 21.46 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 10 |
| 589 | 21.65 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 595 | 21.68 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 16 |
| 698 | 21.90 | temperature | 25 | 270 | < th | dose independent | sin | 0 | NA |
| 777 | 22.10 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 19 |
| 816 | 22.12 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 853 | 22.17 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 859 | 22.18 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 13 |
| 873 | 22.20 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 12 |
| 874 | 22.20 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 13 |
| 931 | 22.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 935 | 22.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 936 | 22.27 | humidity | 90 | 90 | < th | dose dependent | rect. | 22 | 21 |
| 985 | 22.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 986 | 22.33 | humidity | 60 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 1000 | 22.36 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |