BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0497400 Os07g0497400|AK068275
(447 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G49570.1 | chr5:20112071-20116125 REVERSE LENGTH=722 545 e-155
AT5G16630.1 | chr5:5455325-5459461 FORWARD LENGTH=866 52 5e-07
>AT5G49570.1 | chr5:20112071-20116125 REVERSE LENGTH=722
Length = 721
Score = 545 bits (1404), Expect = e-155, Method: Compositional matrix adjust.
Identities = 266/427 (62%), Positives = 321/427 (75%), Gaps = 16/427 (3%)
Query: 1 MVARRFVVRQXXXXXXXXEAEEHEVEYDTEHGLDILRLQIFSLTSVPPELQKIVVEADGS 60
MVAR+FVVR E +V+Y+TE GL++LR IFSLT VPPE QKIV E D
Sbjct: 1 MVARKFVVRH--------EDSSFDVDYNTEDGLEVLRFLIFSLTLVPPEEQKIVAEDDNR 52
Query: 61 VVDDGTDLEAISEGLRLVAITGXXXXXXXXXXXXXXRAQEKSDEELARMIQAEEEALLLQ 120
+V D +DL ++SE LRLV++ KSDEELARM+QAEE+A++ Q
Sbjct: 53 LVSDESDLASLSERLRLVSVGEDSVENSDAEML-------KSDEELARMLQAEEDAIMFQ 105
Query: 121 QYSIRNDGGEEFRERVEPYMHQVLMYEDPMRQEAARKTVPMDELQEKALVSLAKEGNFSP 180
Q+ D GE F R+ PY+ QVLMYEDP+RQ+AARKTVP DEL+EKALVSLAKEGNF P
Sbjct: 106 QFVAARDNGE-FEGRIRPYVSQVLMYEDPVRQDAARKTVPKDELEEKALVSLAKEGNFEP 164
Query: 181 SKDEEDHAFLLQLLFWFKQSFRWVNAPPCDSCGRETFNVGMGTALPSEIKFGANRVEIYR 240
SK+E D+AFLLQLLFWFK+SFRWVN PPCD CG +T GMG L SE+ +GANRVEIYR
Sbjct: 165 SKEERDYAFLLQLLFWFKKSFRWVNEPPCDFCGNKTIGQGMGNPLTSELAYGANRVEIYR 224
Query: 241 CNYCSSTTRFPRYNDPYKLLETRKGRCGEWANCFTFYCRSFGYEARLILDFTDHVWTECF 300
C C +TTRFPRYNDP KL+ET+KGRCGEWANCFT YCR+FGY++RLI+DFTDHVWTEC+
Sbjct: 225 CTMCPTTTRFPRYNDPLKLVETKKGRCGEWANCFTLYCRTFGYDSRLIMDFTDHVWTECY 284
Query: 301 SNLYGRWMHLDPCEGVYDNPLLYEKGWNKKLDYVIAISKDGVRDVTKRYTRKWHEVLSRR 360
S+ RW+HLDPCEGVYD P+LYEKGWNKKL+YVIAISKDGV DVTKRYT+KWHEVLSRR
Sbjct: 285 SHSLKRWIHLDPCEGVYDKPMLYEKGWNKKLNYVIAISKDGVCDVTKRYTKKWHEVLSRR 344
Query: 361 IITSEDTVSAILSSITGKYRSGLSIDGLTALENRDKKESEELSKAAYLEVDTSISLPGRQ 420
+T+E ++ L ++T + R L + L+ LE RD+ E EEL + + + S+SLPGRQ
Sbjct: 345 TLTTESSLQDGLRTLTRERRRSLMFESLSKLELRDRNEQEELERNLHSADNASVSLPGRQ 404
Query: 421 SGSVEWR 427
SG EWR
Sbjct: 405 SGDREWR 411
>AT5G16630.1 | chr5:5455325-5459461 FORWARD LENGTH=866
Length = 865
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 296 WTECF---SNLYGRWMHLDPCEGVYD---NPLLYEKGWNKKLDYVIAISKDGVRDVTKRY 349
W E + N+ G+W+H+D G+ D N L YV+A + G +DVT+RY
Sbjct: 409 WLEVYCNGENMDGKWVHVDAVNGMIDAEQNIEAAAAACKTVLRYVVAFAAGGAKDVTRRY 468
Query: 350 TRKWHEVLSRRI 361
KWH + S+R+
Sbjct: 469 CTKWHTISSKRV 480
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,575,521
Number of extensions: 405207
Number of successful extensions: 1023
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1018
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 345
Effective length of database: 8,310,137
Effective search space: 2866997265
Effective search space used: 2866997265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)