Os07g0496900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0496900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 10.09 | 0.149 | 10.1 | -0.0933 | 0.169 | 0.492 | 0.454 | -1.01 | 0.00983 | 8.53 | 29.4 | 1834 | -- | -- |
| 10.96 | 0.154 | 10.1 | -0.17 | 0.169 | 0.424 | 0.56 | -- | 0.0528 | 7.83 | 28.5 | 1855 | -- | -- |
| 10.74 | 0.153 | 10.1 | -0.0858 | 0.173 | 0.498 | -- | -0.926 | 0.012 | 8.52 | 29.29 | 1859 | -- | -- |
| 10.8 | 0.153 | 10.1 | -0.292 | 0.168 | 0.39 | -- | -- | -0.0165 | 8.54 | 28.9 | 1843 | -- | -- |
| 11.83 | 0.16 | 10.1 | -0.04 | -- | 0.569 | -- | -1.08 | 0.0492 | -- | 28.98 | 2024 | -- | -- |
| 15.24 | 0.183 | 10.1 | -0.416 | 0.229 | -- | 0.489 | -- | -0.0651 | 8.17 | -- | -- | -- | -- |
| 15.97 | 0.187 | 10.1 | -0.402 | 0.229 | -- | -- | -- | -0.0656 | 8.08 | -- | -- | -- | -- |
| 12.11 | 0.162 | 10.1 | -0.279 | -- | 0.458 | -- | -- | -0.007 | -- | 28.7 | 2038 | -- | -- |
| 12.95 | 0.168 | 10.1 | -- | 0.17 | 0.448 | -- | -- | 0.0134 | 8.64 | 28.9 | 1830 | -- | -- |
| 18.85 | 0.203 | 10.1 | -0.4 | -- | -- | -- | -- | -0.0627 | -- | -- | -- | -- | -- |
| 20.23 | 0.21 | 10.1 | -- | 0.227 | -- | -- | -- | -0.0208 | 8.21 | -- | -- | -- | -- |
| 14.05 | 0.175 | 10.1 | -- | -- | 0.518 | -- | -- | 0.0292 | -- | 28.8 | 2048 | -- | -- |
| 23.07 | 0.224 | 10.1 | -- | -- | -- | -- | -- | -0.0183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 7 | 4 |
| 11 | 9.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 18 |
| 14 | 9.75 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 16 | 9.77 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 44 | 10.08 | temperature | 25 | 720 | > th | dose dependent | sin | 9 | NA |
| 66 | 10.18 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 72 | 10.19 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 159 | 10.29 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 171 | 10.30 | temperature | 25 | 1440 | > th | dose dependent | sin | 3 | NA |
| 174 | 10.30 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 183 | 10.31 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 184 | 10.31 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 192 | 10.32 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 198 | 10.32 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 13 |
| 215 | 10.33 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 216 | 10.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 257 | 10.35 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 259 | 10.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 317 | 10.36 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 18 |
| 330 | 10.37 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 12 |
| 331 | 10.37 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 362 | 10.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 382 | 10.38 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 16 |
| 392 | 10.39 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 420 | 10.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 2 |
| 433 | 10.40 | temperature | 25 | 14400 | < th | dose dependent | sin | 21 | NA |
| 490 | 10.42 | temperature | 25 | 14400 | < th | dose independent | sin | 23 | NA |
| 492 | 10.42 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 507 | 10.42 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 524 | 10.43 | temperature | 25 | 14400 | > th | dose independent | sin | 0 | NA |
| 548 | 10.43 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 570 | 10.44 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 574 | 10.44 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 12 |
| 634 | 10.45 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 672 | 10.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 678 | 10.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 705 | 10.46 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 741 | 10.47 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 13 |
| 763 | 10.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 12 |
| 780 | 10.48 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 785 | 10.48 | temperature | 20 | 14400 | < th | dose independent | rect. | 17 | 6 |
| 893 | 10.49 | wind | 1 | 43200 | < th | dose dependent | rect. | 8 | 23 |