BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0496900 Os07g0496900|AK072937
         (470 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12940.1  | chr3:4130242-4131912 REVERSE LENGTH=475            592   e-169
AT3G19895.1  | chr3:6917530-6921211 REVERSE LENGTH=555            146   2e-35

>AT3G12940.1 | chr3:4130242-4131912 REVERSE LENGTH=475
          Length = 474

 Score =  592 bits (1526), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 281/463 (60%), Positives = 360/463 (77%), Gaps = 9/463 (1%)

Query: 6   ANILASLGRVRLCDLAAADGLPSDGYKMCVSALMQSLAQYSAAVVELPPADGALLRSGLD 65
            N + +LGRV++CDL  ++GLPSD YK+ V+ L QSLAQYSAA+++ P +DGALLRSGLD
Sbjct: 4   GNGMPTLGRVKVCDLVPSEGLPSDSYKLAVTTLSQSLAQYSAAIIQFPASDGALLRSGLD 63

Query: 66  SARLFFHQRXXXXXXXXXXXXXXXXXDAREWCKTSGYYADPQMWLEMYDFRPGITPVEPN 125
           SARL+FHQR                 D++EWCKTSGYYADPQ W E Y++RPG+TP EP+
Sbjct: 64  SARLYFHQRDSYPATNNMIHTN----DSQEWCKTSGYYADPQSWQESYEYRPGLTPTEPS 119

Query: 126 GVAELPPSGLPDMFSVLGKVSREVLDAISFSLNLRSSTFTELLDNIPLRSQEVSSSVLSA 185
              E PP+GLPD+F++LGK +R VLDAI F LNLRS  FTE+LDN+PLR+ EVSSSVLS 
Sbjct: 120 NSMEFPPAGLPDIFALLGKAARVVLDAIGFYLNLRSCPFTEILDNVPLRNCEVSSSVLSV 179

Query: 186 CCHSRPSMEGAQQHSVASQDDEQLLMFSDQENQIDKTLLTLVKSDRSGLYIKDLQGRWIL 245
           CC++RPS  GAQ HS+   +DEQL+++SD ++Q+DK+L++ VKSD++GL+I+D+ G+WIL
Sbjct: 180 CCYARPSFHGAQHHSLT--EDEQLILYSDHDHQLDKSLISFVKSDKAGLHIRDMHGQWIL 237

Query: 246 VDGDLGPLDIVVYPGLALYRETAGYVNPAVHKTEVGNLQECMFGRCSLVFKLMPRSVARL 305
           VD DLGP + VVYPGLALY+ TAGYV+PAVH+T++ +LQ  + GR SL FKLMP+S+  L
Sbjct: 238 VDVDLGPQEAVVYPGLALYQATAGYVSPAVHRTDLNSLQGSIEGRFSLAFKLMPKSMTNL 297

Query: 306 SGEEMRAAGHGVDAQFQVPILVNDFMQTEHSANQLFPKNNEPSPHV--EQEASYNFVMKR 363
           S  EMRAAGHGV+AQFQ+P+ V+DFMQ  HS ++LF +    S  V   Q+ S   + KR
Sbjct: 298 SCSEMRAAGHGVEAQFQLPVSVDDFMQRSHSNDELFNRQTLQSFIVPQSQDGSMKQLKKR 357

Query: 364 KKEGRKTKALPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCSLRDCESHIKSLDRPCEN 423
           +K   + K LPPSKRLRLEAQRVLKERVQ+IADKKGIKLRFC+L++CE++   ++ PC N
Sbjct: 358 RKSDSRCKPLPPSKRLRLEAQRVLKERVQEIADKKGIKLRFCNLKECENNHNVMNSPCAN 417

Query: 424 IRTEIGWPPGVPFVHPHDLPNKAKLMFLEAYEPGWTASQQDLE 466
           IR EIGWP GVPFVHPHDLPNKAK+ FLE YEPGW+ +  D+E
Sbjct: 418 IRREIGWPHGVPFVHPHDLPNKAKIGFLETYEPGWSET-HDME 459



>AT3G19895.1 | chr3:6917530-6921211 REVERSE LENGTH=555
          Length = 554

 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 117/355 (32%), Positives = 167/355 (47%), Gaps = 45/355 (12%)

Query: 12  LGRVRLCDLAAADGLPSDGYKMCVSALMQSLAQYSAAVVELPPADGALLRSGLDSARLFF 71
           L RVRL ++   +G PS  Y   V AL  SL +Y+A+V+E+   D AL+R GL++ARL+F
Sbjct: 60  LARVRLSEILPYEGAPSPVYAKAVEALSVSLMRYNASVIEIGSEDTALMRCGLEAARLYF 119

Query: 72  HQRXXXXXXXXXXXXXXXXXDAREWCKTSGYYADPQMWLEMYDFRPGITPVEPNGVAELP 131
             R                         SG        L MY     +  ++ +      
Sbjct: 120 RTRSL---------------------TVSG---KGNRGLSMYRAGRSVEDLDSS------ 149

Query: 132 PSGLPDMFSVLGKVSREVLDAISFSLNLRSSTFTELLDNIPLRSQEVSSSVLSACCHSRP 191
           P  + ++F  LGKV+R  L AI+  L LRS  F  +LD+ PL   EVSSSVL A  ++  
Sbjct: 150 PPCMAEIFRCLGKVARAALSAIARHLRLRSDVFNHMLDDFPLAPNEVSSSVLLA-SYAHA 208

Query: 192 SMEGAQQHSVASQDDEQLLMFSDQENQIDKTLLTLVKSDRSGLYIKDLQGRWILVDGDLG 251
           S++  +  S       ++        +++K LLTL  SD +G+ + D  GRW   D   G
Sbjct: 209 SIQNGKHASGGGNLSAKI--------EVEKGLLTLFCSDGTGIQVCDPNGRWYTADNGCG 260

Query: 252 PLDIVVYPGLALYRETAGYVNPAVHKTEVGNLQEC-MFGRCSLVFKLMPRSVARLSGEEM 310
             D+++  G AL   TAG    A ++T   +L      GR SL F+LMP+S A L    +
Sbjct: 261 VGDLLLITGKALSHATAGLRPAASYRTTTDHLSATDTRGRASLAFRLMPKSNAILDCSPI 320

Query: 311 RAAGHGVDAQFQVPILVNDFMQTEHSANQLF----PKNNEPSPHVEQEASYNFVM 361
            AAGH V  Q  VP+ V+ FM    + N        K N P   V +E S   V+
Sbjct: 321 EAAGH-VIPQSYVPVSVSQFMDNLLAENDTLVNPPVKTNVPRDDVCKEPSLRSVL 374



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,760,742
Number of extensions: 394547
Number of successful extensions: 1127
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1122
Number of HSP's successfully gapped: 3
Length of query: 470
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 368
Effective length of database: 8,310,137
Effective search space: 3058130416
Effective search space used: 3058130416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)