Os07g0495000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cupin, RmlC-type domain containing protein.
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Os07g0495000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cupin, RmlC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.78 | 0.243 | 11 | -0.546 | 0.653 | 0.777 | 0.144 | -2.25 | -0.165 | 9.47 | 29.59 | 448 | -- | -- |
| 28.35 | 0.248 | 11 | -0.604 | 0.574 | 0.712 | 0.143 | -- | -0.138 | 10.1 | 28.97 | 477 | -- | -- |
| 26.76 | 0.241 | 11 | -0.536 | 0.636 | 0.8 | -- | -2.27 | -0.162 | 9.51 | 29.6 | 483 | -- | -- |
| 27.2 | 0.243 | 11 | -0.759 | 0.61 | 0.606 | -- | -- | -0.175 | 9.74 | 28.91 | 479 | -- | -- |
| 43.79 | 0.308 | 11 | -0.45 | -- | 0.983 | -- | -1.45 | -0.0621 | -- | 28.4 | 640 | -- | -- |
| 33.68 | 0.272 | 11 | -0.879 | 0.833 | -- | 0.408 | -- | -0.22 | 8.4 | -- | -- | -- | -- |
| 34.19 | 0.274 | 11 | -0.866 | 0.831 | -- | -- | -- | -0.219 | 8.46 | -- | -- | -- | -- |
| 44.16 | 0.309 | 11 | -0.722 | -- | 0.862 | -- | -- | -0.117 | -- | 28.2 | 613 | -- | -- |
| 42.02 | 0.302 | 11 | -- | 0.581 | 0.725 | -- | -- | -0.065 | 10.4 | 28.5 | 501 | -- | -- |
| 72.73 | 0.398 | 11 | -0.862 | -- | -- | -- | -- | -0.211 | -- | -- | -- | -- | -- |
| 53.96 | 0.344 | 11 | -- | 0.827 | -- | -- | -- | -0.123 | 8.54 | -- | -- | -- | -- |
| 55.97 | 0.348 | 11 | -- | -- | 0.996 | -- | -- | -0.0256 | -- | 28.2 | 657 | -- | -- |
| 92.33 | 0.449 | 11 | -- | -- | -- | -- | -- | -0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.80 | wind | 3.0 | 270 | > th | dose independent | rect. | 13 | 6 |
| 2 | 23.92 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 14 | 5 |
| 10 | 24.24 | radiation | 1.0 | 270 | < th | dose dependent | sin | 15 | NA |
| 13 | 24.36 | radiation | 1.0 | 270 | < th | dose independent | sin | 14 | NA |
| 14 | 24.37 | wind | 1.0 | 270 | > th | dose dependent | rect. | 13 | 6 |
| 16 | 24.42 | temperature | 20.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 28 | 24.58 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 33 | 24.64 | radiation | 1.0 | 270 | > th | dose independent | sin | 15 | NA |
| 35 | 24.64 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 39 | 24.70 | radiation | 1.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 53 | 24.72 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 64 | 24.87 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 16 | 5 |
| 94 | 25.09 | temperature | 30.0 | 270 | < th | dose independent | rect. | 9 | 15 |
| 98 | 25.12 | wind | 1.0 | 270 | > th | dose dependent | rect. | 15 | 2 |
| 99 | 25.12 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 102 | 25.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 104 | 25.17 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 105 | 25.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 107 | 25.18 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 109 | 25.18 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 110 | 25.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 19 |
| 121 | 25.21 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 132 | 25.25 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 5 |
| 134 | 25.25 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 5 |
| 142 | 25.26 | temperature | 30.0 | 270 | < th | dose independent | rect. | 19 | 19 |
| 146 | 25.26 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 148 | 25.27 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 180 | 25.40 | temperature | 25.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 193 | 25.44 | radiation | 1.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 200 | 25.46 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 210 | 25.50 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 11 |
| 212 | 25.51 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 219 | 25.54 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 230 | 25.57 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 232 | 25.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 233 | 25.58 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 234 | 25.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 235 | 25.58 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 16 |
| 236 | 25.58 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 238 | 25.59 | wind | 9.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 247 | 25.61 | humidity | 50.0 | 270 | > th | dose independent | rect. | 19 | 18 |
| 249 | 25.62 | humidity | 90.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 256 | 25.63 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 8 |
| 265 | 25.65 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 267 | 25.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 8 |
| 268 | 25.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 286 | 25.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 287 | 25.70 | humidity | 90.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 298 | 25.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 18 |
| 300 | 25.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 18 |
| 301 | 25.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 303 | 25.71 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 15 | 2 |
| 308 | 25.71 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 312 | 25.73 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 326 | 25.76 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 5 |
| 327 | 25.76 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 330 | 25.77 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 2 |
| 332 | 25.77 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 2 |
| 352 | 25.79 | humidity | 70.0 | 270 | > th | dose independent | rect. | 18 | 8 |
| 376 | 25.86 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 5 |
| 393 | 25.89 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 407 | 25.91 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 17 |
| 410 | 25.91 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 17 |
| 493 | 26.05 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 505 | 26.07 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 5 |
| 507 | 26.07 | wind | 7.0 | 270 | < th | dose independent | rect. | 19 | 7 |
| 509 | 26.07 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 5 |
| 517 | 26.09 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 21 | 19 |
| 524 | 26.10 | radiation | 40.0 | 270 | < th | dose independent | rect. | 14 | 16 |
| 557 | 26.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 561 | 26.14 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 19 | 7 |
| 567 | 26.14 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 17 |
| 568 | 26.14 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 581 | 26.16 | wind | 1.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 584 | 26.16 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 14 | 16 |
| 585 | 26.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 17 |
| 627 | 26.23 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 19 | 6 |
| 632 | 26.24 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 15 | 2 |
| 633 | 26.24 | radiation | 30.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 639 | 26.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 7 |
| 643 | 26.25 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 645 | 26.25 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 652 | 26.25 | temperature | 10.0 | 10 | > th | dose independent | rect. | 21 | 19 |
| 656 | 26.26 | wind | 9.0 | 10 | < th | dose independent | rect. | 16 | 5 |
| 659 | 26.26 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 24 | 7 |
| 670 | 26.27 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 14 |
| 677 | 26.28 | wind | 9.0 | 10 | < th | dose independent | rect. | 21 | 19 |
| 706 | 26.31 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 23 | 10 |
| 708 | 26.31 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 21 | 19 |
| 710 | 26.31 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 773 | 26.36 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 7 |
| 802 | 26.38 | temperature | 30.0 | 270 | < th | dose independent | rect. | 6 | 8 |
| 824 | 26.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 19 | 7 |
| 831 | 26.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 19 | 7 |
| 876 | 26.42 | radiation | 1.0 | 270 | > th | dose dependent | sin | 13 | NA |
| 894 | 26.45 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 907 | 26.47 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 5 |
| 964 | 26.52 | temperature | 15.0 | 270 | > th | dose independent | rect. | 23 | 10 |
| 980 | 26.53 | wind | 9.0 | 270 | < th | dose independent | rect. | 23 | 10 |
| 982 | 26.53 | humidity | 50.0 | 270 | > th | dose independent | rect. | 23 | 10 |
| 983 | 26.53 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 23 | 10 |
| 984 | 26.53 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 14 |
| 999 | 26.55 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 16 | 6 |