BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0495000 Os07g0495000|AK073883
         (309 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17050.1  | chr4:9589662-9592413 FORWARD LENGTH=299            434   e-122

>AT4G17050.1 | chr4:9589662-9592413 FORWARD LENGTH=299
          Length = 298

 Score =  434 bits (1115), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 205/280 (73%), Positives = 235/280 (83%), Gaps = 3/280 (1%)

Query: 29  EGFCSAEPSAASGGCSGVRPPLYWKATNPTLAPAHLQDLPGFTRSVYKRDHALITPESHV 88
           +GFCSA     S   +    P+YWKATNPTL+P+HLQDLPGFTRSVYKRDHALITPESHV
Sbjct: 22  DGFCSAPSIVESDEKTN---PIYWKATNPTLSPSHLQDLPGFTRSVYKRDHALITPESHV 78

Query: 89  FSPLPDWINTLGAYLISPAIGAHFTMYLAKMHDGSKSALPPKGVERLIFVLQGSILLSEE 148
           +SPLPDW NTLGAYLI+PA G+HF MYLAKM + S S LPP+ +ERLIFV++G++ L+  
Sbjct: 79  YSPLPDWTNTLGAYLITPATGSHFVMYLAKMKEMSSSGLPPQDIERLIFVVEGAVTLTNT 138

Query: 149 SGNTHTLLVDSYAYLPANMKHSVISDEVTTLVIFERRYTTIEGYHPDLIVGSTDKQPLLE 208
           S ++  L VDSYAYLP N  HS+   E  TLV+FERRY  +  +  +LIVGSTDKQPLLE
Sbjct: 139 SSSSKKLTVDSYAYLPPNFHHSLDCVESATLVVFERRYEYLGSHTTELIVGSTDKQPLLE 198

Query: 209 TPGEVFELRKLLPTSLPYDFNIHIMDFQPGEYLNVKEVHYNQHGLLLLEGQGIYRLGDSW 268
           TPGEVFELRKLLP S+ YDFNIH MDFQPGE+LNVKEVHYNQHGLLLLEGQGIYRLGD+W
Sbjct: 199 TPGEVFELRKLLPMSVAYDFNIHTMDFQPGEFLNVKEVHYNQHGLLLLEGQGIYRLGDNW 258

Query: 269 YPVQSGDTIWMAPFVPQWYAALGKTKTRYLLYKDVNRDPL 308
           YPVQ+GD IWMAPFVPQWYAALGKT++RYLLYKDVNR+PL
Sbjct: 259 YPVQAGDVIWMAPFVPQWYAALGKTRSRYLLYKDVNRNPL 298



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,855,876
Number of extensions: 299521
Number of successful extensions: 525
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 525
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 211
Effective length of database: 8,419,801
Effective search space: 1776578011
Effective search space used: 1776578011
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)