Os07g0492400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Plus agglutinin.
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Os07g0492400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Plus agglutinin.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.22 | 0.336 | 8.03 | 1.16 | 0.531 | -0.468 | 0.947 | -0.206 | 0.207 | 23.3 | 24.33 | 481 | -- | -- |
| 51.35 | 0.334 | 8.03 | 1.1 | 0.52 | -0.474 | 0.975 | -- | 0.191 | 23.3 | 24.3 | 480 | -- | -- |
| 55 | 0.345 | 8.02 | 1.18 | 0.519 | -0.457 | -- | -0.37 | 0.224 | 23.2 | 24.39 | 506 | -- | -- |
| 55.31 | 0.346 | 8.04 | 1.05 | 0.524 | -0.477 | -- | -- | 0.182 | 23.3 | 24.4 | 481 | -- | -- |
| 64.86 | 0.375 | 8.03 | 1.13 | -- | -0.719 | -- | -0.464 | 0.157 | -- | 24.7 | 731 | -- | -- |
| 62.31 | 0.37 | 7.99 | 1.26 | 0.64 | -- | 0.968 | -- | 0.396 | 22.4 | -- | -- | -- | -- |
| 66.1 | 0.381 | 8 | 1.22 | 0.636 | -- | -- | -- | 0.394 | 22.3 | -- | -- | -- | -- |
| 65.32 | 0.376 | 8.04 | 0.993 | -- | -0.737 | -- | -- | 0.112 | -- | 24.71 | 729 | -- | -- |
| 82.88 | 0.424 | 8.1 | -- | 0.487 | -0.65 | -- | -- | -0.015 | 23.2 | 24.4 | 579 | -- | -- |
| 90.77 | 0.445 | 7.98 | 1.23 | -- | -- | -- | -- | 0.396 | -- | -- | -- | -- | -- |
| 105.6 | 0.481 | 8.03 | -- | 0.643 | -- | -- | -- | 0.258 | 22.4 | -- | -- | -- | -- |
| 89.78 | 0.441 | 8.08 | -- | -- | -0.921 | -- | -- | -0.0609 | -- | 24.73 | 764 | -- | -- |
| 130.94 | 0.534 | 8.01 | -- | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.86 | temperature | 15 | 30 | > th | dose dependent | rect. | 13 | 16 |
| 8 | 49.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 12 | 50.03 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 19 |
| 15 | 50.07 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 17 | 50.10 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 22 |
| 18 | 50.12 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 21 | 50.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 21 |
| 78 | 50.81 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 6 |
| 79 | 50.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 19 |
| 97 | 51.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 108 | 51.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 141 | 51.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 145 | 51.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 22 |
| 175 | 51.44 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 6 |
| 225 | 51.63 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 296 | 51.90 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 308 | 51.92 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 19 |
| 420 | 52.27 | temperature | 25 | 1440 | < th | dose independent | sin | 11 | NA |
| 426 | 52.29 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 434 | 52.31 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 437 | 52.32 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 444 | 52.34 | temperature | 20 | 30 | > th | dose independent | rect. | 13 | 16 |
| 496 | 52.48 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 19 |
| 523 | 52.56 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 526 | 52.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 532 | 52.58 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 5 | 23 |
| 535 | 52.59 | temperature | 25 | 1440 | > th | dose independent | sin | 12 | NA |
| 557 | 52.62 | temperature | 25 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 566 | 52.64 | wind | 5 | 270 | < th | dose independent | rect. | 23 | 17 |
| 585 | 52.67 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 20 |
| 659 | 52.79 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 5 | 10 |
| 674 | 52.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 17 |
| 680 | 52.83 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 14 |
| 692 | 52.84 | wind | 1 | 10 | > th | dose independent | rect. | 4 | 1 |
| 823 | 53.00 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 19 |
| 843 | 53.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 868 | 53.05 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 22 |
| 918 | 53.10 | temperature | 25 | 90 | > th | dose independent | rect. | 2 | 3 |
| 990 | 53.16 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 19 |