BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0492400 Os07g0492400|Os07g0492400
         (218 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G20230.1  | chr1:7009570-7011852 FORWARD LENGTH=761             53   1e-07
AT5G15300.1  | chr5:4968384-4970030 REVERSE LENGTH=549             52   2e-07
AT4G39952.1  | chr4:18527680-18530007 FORWARD LENGTH=776           50   1e-06

>AT1G20230.1 | chr1:7009570-7011852 FORWARD LENGTH=761
          Length = 760

 Score = 52.8 bits (125), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 1/59 (1%)

Query: 155 FLPFCLLVAMKDLLMRVDEGKKLFTRM-EEYSLEPNLKHYACMVNRLGRASSRGRRYDL 212
           F+ F  L++    +   DEG K F  M EEY ++P L+HY+CMVN LGRA      YDL
Sbjct: 489 FISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDL 547



>AT5G15300.1 | chr5:4968384-4970030 REVERSE LENGTH=549
          Length = 548

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 29/35 (82%), Gaps = 1/35 (2%)

Query: 170 RVDEGKKLFTRMEE-YSLEPNLKHYACMVNRLGRA 203
           RVDEG+K F+ M + Y++EPN+KHY CMV+ LGRA
Sbjct: 395 RVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRA 429



>AT4G39952.1 | chr4:18527680-18530007 FORWARD LENGTH=776
          Length = 775

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/35 (51%), Positives = 29/35 (82%)

Query: 171 VDEGKKLFTRMEEYSLEPNLKHYACMVNRLGRASS 205
           V++GKKLF +M +Y ++PNLKHY+C+V+ L R+ +
Sbjct: 650 VEQGKKLFLKMHQYDVKPNLKHYSCLVDLLSRSGN 684



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,876,532
Number of extensions: 139670
Number of successful extensions: 912
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 3
Length of query: 218
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 123
Effective length of database: 8,502,049
Effective search space: 1045752027
Effective search space used: 1045752027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)