Os07g0486100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RFT1 family protein.
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Os07g0486100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RFT1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.37 | 0.271 | 8.69 | -0.263 | 1.12 | -0.808 | 0.358 | 2.05 | -0.065 | 6.19 | 26.86 | 2879 | -- | -- |
| 37.13 | 0.284 | 8.76 | -0.55 | 1.21 | -0.768 | 0.312 | -- | -0.0287 | 6.25 | 23.1 | 8542 | -- | -- |
| 33.67 | 0.27 | 8.69 | -0.265 | 1.12 | -0.795 | -- | 2.01 | -0.0647 | 6.18 | 26.84 | 2846 | -- | -- |
| 35.4 | 0.277 | 8.72 | -0.512 | 1.14 | -0.89 | -- | -- | 0.00497 | 6.41 | 22.1 | 10003 | -- | -- |
| 79.99 | 0.417 | 8.72 | -0.256 | -- | -0.944 | -- | 2.08 | -0.107 | -- | 27.14 | 1985 | -- | -- |
| 53.38 | 0.343 | 8.8 | -1.18 | 1.12 | -- | 0.211 | -- | -0.359 | 6.5 | -- | -- | -- | -- |
| 53.49 | 0.343 | 8.8 | -1.17 | 1.12 | -- | -- | -- | -0.36 | 6.51 | -- | -- | -- | -- |
| 82.56 | 0.423 | 8.76 | -0.782 | -- | -0.975 | -- | -- | -0.0503 | -- | 26.31 | 1950 | -- | -- |
| 34.38 | 0.273 | 8.7 | -- | 1.12 | -1.13 | -- | -- | 0.106 | 6.15 | 20.5 | 24261 | -- | -- |
| 118.42 | 0.508 | 8.82 | -1.15 | -- | -- | -- | -- | -0.337 | -- | -- | -- | -- | -- |
| 89.75 | 0.443 | 8.77 | -- | 1.1 | -- | -- | -- | -0.229 | 6.57 | -- | -- | -- | -- |
| 97.37 | 0.46 | 8.75 | -- | -- | -1.17 | -- | -- | 0.0579 | -- | 26.3 | 1949 | -- | -- |
| 153.01 | 0.577 | 8.79 | -- | -- | -- | -- | -- | -0.21 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 7 | 31.73 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 45 | 32.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 23 |
| 68 | 32.66 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 71 | 32.68 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 105 | 32.85 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 14 |
| 106 | 32.86 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 116 | 32.93 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 161 | 33.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 23 |
| 170 | 33.12 | temperature | 20 | 1440 | > th | dose dependent | sin | 7 | NA |
| 199 | 33.20 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 13 |
| 261 | 33.34 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 317 | 33.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 327 | 33.43 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 328 | 33.44 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 342 | 33.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 357 | 33.47 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 11 |
| 363 | 33.49 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 372 | 33.50 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 401 | 33.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 14 |
| 404 | 33.55 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 412 | 33.56 | temperature | 30 | 1440 | < th | dose dependent | sin | 6 | NA |
| 415 | 33.56 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 2 |
| 421 | 33.56 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 451 | 33.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 7 |
| 452 | 33.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 481 | 33.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 490 | 33.66 | radiation | 10 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 510 | 33.68 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 18 |
| 601 | 33.78 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 636 | 33.82 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 3 |
| 668 | 33.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 681 | 33.86 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 715 | 33.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 732 | 33.92 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 737 | 33.92 | temperature | 20 | 4320 | > th | dose dependent | rect. | 7 | 16 |
| 907 | 34.08 | radiation | 1 | 14400 | > th | dose independent | sin | 9 | NA |
| 930 | 34.09 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 943 | 34.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 9 |
| 972 | 34.12 | temperature | 20 | 4320 | > th | dose dependent | sin | 22 | NA |
| 987 | 34.13 | radiation | 1 | 14400 | < th | dose independent | sin | 9 | NA |
| 991 | 34.13 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |