BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0486100 Os07g0486100|AK069694
         (305 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07630.1  | chr5:2410703-2414523 FORWARD LENGTH=612            362   e-100

>AT5G07630.1 | chr5:2410703-2414523 FORWARD LENGTH=612
          Length = 611

 Score =  362 bits (928), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/293 (58%), Positives = 222/293 (75%), Gaps = 2/293 (0%)

Query: 6   RLSAMMDCDKQLLHMCMLFTGQTFRKLMLQEGEKFVLVWFDTPYNQAAYGLVDKLGSLVV 65
           R    MD D  L  MC LFT Q+FRKL+LQEGEK VLVW DTPYNQA YG+VDKLGSLVV
Sbjct: 311 RPGNFMDFDNDLSKMCKLFTFQSFRKLILQEGEKLVLVWLDTPYNQAVYGIVDKLGSLVV 370

Query: 66  RIVFLPFEESSYATFAQLASGQNPQNISNLEGSLLGALKLIMLIGLVVISFGPSYSYTLL 125
           R+VFLPFEESSY  FA+ ASG   +    L   L  ALKL++LIGL+ ++FGPSYSY+L+
Sbjct: 371 RMVFLPFEESSYTIFARFASGDYQERNKKLGIYLTVALKLVILIGLIFMAFGPSYSYSLI 430

Query: 126 RLLYGARYSDGDATVILRYYCFYVICLAMNGTSEAFLHAVANEDKLKQSNDMLLLFSAIY 185
           RLLYG ++SDG+A++ L++YC Y+I LAMNGTSEAFLHAV  +++L++SNDMLL+FS IY
Sbjct: 431 RLLYGEKWSDGEASLALQFYCLYIIVLAMNGTSEAFLHAVGTKNELERSNDMLLIFSLIY 490

Query: 186 IVLNVVLIKSAGAVGLIAANSINMLLRITYSAAFIKDYFKG--SFSFRHCLPAGWGVLLI 243
           + LN++LI+SAGA+GLI ANS+NM+ RI YS  FI+ YF+G  SFSFR C P GW +L++
Sbjct: 491 VALNILLIRSAGAIGLIMANSLNMIFRIIYSGRFIQRYFQGTSSFSFRKCFPLGWQILIL 550

Query: 244 SGLTTAFSERMFLNRNRFKQTLPIHMAIGIMCLGFSSLEIYRGEKQFLTSIIR 296
           S + T  SE+  L+R  F +T P+H  IG++C   S++ IYR E+ F+  I R
Sbjct: 551 SSIITLISEKTILDRKNFWETFPLHFGIGVICFCLSAIVIYRRERVFIKRIKR 603



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.140    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,926,205
Number of extensions: 235931
Number of successful extensions: 679
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 678
Number of HSP's successfully gapped: 1
Length of query: 305
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 207
Effective length of database: 8,419,801
Effective search space: 1742898807
Effective search space used: 1742898807
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)