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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0486000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MSH4.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.0526) R2 : 0.0374
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.467 (0.111) R2dN8 : 0.0483 R2N8 : 0.0374
σ : 0.991
deviance : 450.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
420.53 0.963 3.12 -0.412 0.0412 0.509 -1.86 4.35 0.491 3.46 0.4996 3289 -- --
429.4 0.965 3.17 -0.364 0.0634 0.846 -1.74 -- 0.487 3.16 0.5002 3091 -- --
431.26 0.967 3.12 -0.384 0.0429 0.503 -- 4.35 0.497 3.05 0.4991 3288 -- --
438.63 0.975 3.17 -0.314 0.0945 0.827 -- -- 0.503 23.5 0.5668 3796 -- --
431.23 0.967 3.12 -0.355 -- 0.397 -- 4.36 0.493 -- 0.4989 3300 -- --
441.77 0.985 3.18 -0.134 0.0797 -- -1.63 -- 0.444 3.26 -- -- -- --
449.98 0.993 3.18 -0.102 0.101 -- -- -- 0.454 23.9 -- -- -- --
438.92 0.976 3.17 -0.332 -- 0.816 -- -- 0.504 -- 0.6688 4094 -- --
441.02 0.978 3.16 -- 0.0892 0.685 -- -- 0.528 23.4 0.7245 4117 -- --
450.62 0.992 3.18 -0.0985 -- -- -- -- 0.456 -- -- -- -- --
450.25 0.993 3.18 -- 0.0996 -- -- -- 0.466 23.9 -- -- -- --
441.52 0.979 3.16 -- -- 0.689 -- -- 0.529 -- 0.7201 4094 -- --
450.88 0.991 3.18 -- -- -- -- -- 0.467 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 412.97 radiation 1.0 90 < th dose independent rect. 9 2
2 412.97 radiation 1.0 90 < th dose dependent rect. 9 2
5 413.45 radiation 1.0 720 > th dose dependent rect. 18 11
6 413.84 wind 1.0 720 > th dose independent rect. 7 18
7 413.97 wind 1.0 720 > th dose independent rect. 13 13
8 415.01 wind 1.0 4320 < th dose dependent rect. 13 1
9 415.07 wind 1.0 14400 > th dose independent rect. 13 1
10 415.09 wind 1.0 14400 < th dose independent rect. 13 1
11 415.31 humidity 50.0 14400 < th dose dependent rect. 17 1
26 415.33 radiation 1.0 14400 < th dose dependent rect. 7 3
29 415.47 radiation 1.0 90 > th dose independent rect. 4 1
39 415.47 radiation 1.0 90 > th dose dependent rect. 4 1
54 415.76 radiation 40.0 4320 < th dose independent rect. 15 4
55 415.84 wind 1.0 10 < th dose independent rect. 13 1
57 415.84 wind 1.0 10 < th dose dependent rect. 13 1
60 415.90 humidity 50.0 14400 < th dose independent rect. 17 1
80 416.65 radiation 1.0 4320 > th dose independent rect. 7 4
81 416.72 humidity 50.0 14400 > th dose dependent rect. 19 1
83 416.78 radiation 1.0 4320 < th dose independent rect. 7 4
85 416.80 humidity 90.0 14400 < th dose dependent rect. 19 1
87 416.86 humidity 50.0 14400 > th dose independent rect. 17 1
89 416.93 wind 9.0 1440 < th dose independent rect. 14 2
91 416.94 radiation 40.0 4320 < th dose independent rect. 15 15
97 417.14 humidity 80.0 1440 < th dose dependent rect. 23 1
99 417.17 humidity 80.0 1440 < th dose independent rect. 23 2
101 417.25 radiation 40.0 4320 < th dose independent rect. 15 7
106 417.39 wind 7.0 1440 < th dose dependent rect. 12 2
113 417.59 radiation 40.0 4320 < th dose independent rect. 15 9
114 417.61 humidity 50.0 1440 > th dose independent rect. 12 1
117 417.82 humidity 80.0 1440 > th dose independent rect. 23 2
118 417.82 wind 1.0 720 < th dose dependent rect. 7 18
122 417.88 wind 1.0 1440 < th dose independent rect. 12 9
126 418.00 wind 3.0 30 > th dose independent rect. 9 2
128 418.04 radiation 40.0 4320 < th dose independent rect. 15 1
130 418.06 wind 1.0 4320 < th dose independent rect. 13 6
134 418.18 wind 1.0 4320 > th dose independent rect. 13 6
135 418.23 precipitation 0.1 4320 < th dose independent rect. 4 10
136 418.23 precipitation 0.1 4320 < th dose dependent rect. 4 10
142 418.43 wind 1.0 720 < th dose dependent rect. 12 13
150 418.48 wind 1.0 1440 > th dose independent rect. 12 9
156 418.55 wind 1.0 1440 > th dose dependent rect. 12 2
157 418.56 humidity 60.0 720 > th dose independent rect. 17 6
164 418.58 precipitation 0.1 4320 > th dose independent rect. 4 10
184 418.90 humidity 70.0 14400 < th dose dependent rect. 17 1
193 418.98 wind 1.0 720 < th dose dependent sin 19 NA
197 419.04 humidity 70.0 14400 < th dose independent rect. 16 4
206 419.15 humidity 60.0 720 > th dose independent rect. 17 14
215 419.25 precipitation 0.1 4320 > th dose dependent rect. 4 8
220 419.34 radiation 10.0 1440 < th dose independent rect. 18 1
241 419.47 wind 1.0 1440 < th dose dependent rect. 13 6
247 419.54 wind 1.0 720 < th dose independent rect. 12 13
249 419.55 humidity 70.0 14400 > th dose independent rect. 17 3
264 419.59 humidity 70.0 14400 < th dose independent rect. 16 16
276 419.70 humidity 60.0 14400 > th dose independent rect. 10 2
277 419.71 humidity 60.0 14400 < th dose independent rect. 10 10
285 419.74 wind 1.0 720 > th dose independent rect. 21 5
303 419.81 humidity 60.0 14400 < th dose independent sin 16 NA
305 419.81 precipitation 0.1 4320 > th dose dependent rect. 4 3
309 419.83 precipitation 0.1 4320 > th dose independent rect. 5 4
315 419.85 precipitation 0.1 4320 > th dose dependent rect. 4 5
318 419.87 wind 3.0 30 > th dose independent rect. 21 14
320 419.88 humidity 60.0 14400 < th dose independent rect. 19 1
323 419.90 humidity 60.0 14400 > th dose independent rect. 10 10
335 419.91 humidity 80.0 14400 < th dose independent rect. 19 1
337 419.91 radiation 1.0 4320 < th dose independent rect. 6 11
349 419.92 radiation 1.0 4320 > th dose independent rect. 6 11
359 419.93 humidity 60.0 14400 > th dose independent rect. 10 17
370 419.96 radiation 1.0 1440 < th dose independent rect. 2 3
397 420.02 humidity 60.0 14400 < th dose independent rect. 17 23
402 420.03 humidity 60.0 14400 > th dose independent rect. 14 6
407 420.04 humidity 60.0 14400 < th dose independent rect. 14 6
411 420.04 humidity 70.0 14400 < th dose dependent rect. 10 1
414 420.05 humidity 60.0 14400 > th dose independent sin 16 NA
415 420.05 humidity 60.0 14400 > th dose independent rect. 14 22
417 420.06 humidity 60.0 14400 < th dose independent rect. 11 1
433 420.07 humidity 60.0 14400 < th dose independent rect. 10 3
438 420.07 humidity 60.0 14400 > th dose independent rect. 14 13
440 420.07 humidity 60.0 14400 > th dose independent rect. 14 15
450 420.08 radiation 40.0 4320 > th dose independent rect. 15 17
451 420.08 humidity 70.0 14400 < th dose dependent sin 15 NA
462 420.10 precipitation 0.1 4320 > th dose dependent rect. 6 3
470 420.11 radiation 10.0 1440 < th dose independent rect. 18 11
480 420.12 humidity 60.0 14400 < th dose dependent rect. 19 1
505 420.13 humidity 60.0 14400 < th dose independent rect. 15 22
548 420.17 humidity 60.0 14400 > th dose independent rect. 17 23
551 420.17 humidity 70.0 14400 < th dose dependent rect. 15 21
595 420.21 humidity 60.0 14400 < th dose independent no NA NA
604 420.21 humidity 60.0 14400 > th dose independent rect. 17 19
637 420.22 precipitation 0.1 4320 < th dose independent rect. 4 2
647 420.22 wind 1.0 720 < th dose independent rect. 7 18
654 420.22 precipitation 0.1 4320 < th dose dependent rect. 4 2
674 420.24 humidity 50.0 43200 < th dose dependent rect. 15 3
681 420.25 humidity 70.0 14400 < th dose dependent rect. 10 10
698 420.29 humidity 70.0 14400 > th dose independent rect. 16 11
791 420.36 humidity 60.0 14400 > th dose independent rect. 4 16
857 420.39 humidity 60.0 14400 > th dose independent no NA NA
861 420.39 humidity 60.0 14400 < th dose independent rect. 10 6
923 420.41 radiation 30.0 14400 > th dose dependent rect. 15 1
953 420.47 wind 1.0 10 < th dose dependent rect. 13 5
958 420.48 humidity 60.0 14400 > th dose independent rect. 10 6
980 420.49 radiation 1.0 4320 < th dose dependent rect. 6 11