BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0486000 Os07g0486000|AK069343
         (249 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17380.1  | chr4:9708742-9714068 FORWARD LENGTH=793            348   2e-96

>AT4G17380.1 | chr4:9708742-9714068 FORWARD LENGTH=793
          Length = 792

 Score =  348 bits (892), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 167/225 (74%), Positives = 187/225 (83%)

Query: 13  RSSIVIGLIENRAKEVGVAAFDLRSASLHLSQYIETSCSYHNTKTLLHFYDPMVAIVPPN 72
           RSS V GLIENRAKEVG+AAFDLRSASLHLSQYIETS SY NTKTLL FYDP V IVPPN
Sbjct: 8   RSSFVAGLIENRAKEVGMAAFDLRSASLHLSQYIETSSSYQNTKTLLRFYDPSVIIVPPN 67

Query: 73  KTAADGMVGVSELVGKHLPTNKKITMARGCFDDTKGAVMVKNLSARDPSALGLDTYCKQY 132
           K AADGMVGVSELV +   T +K+  ARGCFDDTKGAV+++NL+A +P ALGLDTY KQ+
Sbjct: 68  KLAADGMVGVSELVDRCYSTVRKVVFARGCFDDTKGAVLIQNLAAEEPLALGLDTYYKQH 127

Query: 133 YLCLAAASATIKWIESERGVIITNHSLSVTFNGSFDHMNIDSTSVQTLEIIDPLHTELWG 192
           YL LAAA+ATIKWIE+E+GVI+TNHSL+VTFNGSFDHMNID+TSV+ LE+IDP H  L G
Sbjct: 128 YLSLAAAAATIKWIEAEKGVIVTNHSLTVTFNGSFDHMNIDATSVENLELIDPFHNALLG 187

Query: 193 TSNKKKSLFQMXXXXXXXXXXXXXXANLLQPLKDIQTINTRLDCL 237
           TSNKK+SLFQM              ANLLQPLKDI+TINTRLDCL
Sbjct: 188 TSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIETINTRLDCL 232



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.133    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,524,993
Number of extensions: 159397
Number of successful extensions: 325
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 153
Effective length of database: 8,474,633
Effective search space: 1296618849
Effective search space used: 1296618849
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)