Os07g0485400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Asparaginyl-tRNA synthetase, class IIb family protein.
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Os07g0485400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Asparaginyl-tRNA synthetase, class IIb family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.31 | 0.33 | 11.4 | -0.465 | 1.3 | 0.615 | -0.0445 | -0.137 | -0.571 | 22.5 | 25.26 | 363 | -- | -- |
| 49.35 | 0.327 | 11.4 | -0.426 | 1.3 | 0.607 | -0.0528 | -- | -0.558 | 22.5 | 25.23 | 363 | -- | -- |
| 49.31 | 0.327 | 11.4 | -0.465 | 1.3 | 0.616 | -- | -0.141 | -0.572 | 22.5 | 25.27 | 363 | -- | -- |
| 49.36 | 0.327 | 11.4 | -0.425 | 1.3 | 0.608 | -- | -- | -0.558 | 22.5 | 25.23 | 363 | -- | -- |
| 115.06 | 0.5 | 11.4 | -0.639 | -- | 1.37 | -- | -0.421 | -0.783 | -- | 25.7 | 706 | -- | -- |
| 64.48 | 0.376 | 11.3 | -0.252 | 1.49 | -- | -0.132 | -- | -0.293 | 21.5 | -- | -- | -- | -- |
| 64.55 | 0.376 | 11.3 | -0.248 | 1.49 | -- | -- | -- | -0.293 | 21.5 | -- | -- | -- | -- |
| 115.43 | 0.5 | 11.4 | -0.621 | -- | 1.31 | -- | -- | -0.753 | -- | 25.7 | 706 | -- | -- |
| 53.77 | 0.342 | 11.4 | -- | 1.33 | 0.55 | -- | -- | -0.487 | 22.4 | 25.49 | 346 | -- | -- |
| 195.27 | 0.653 | 11.3 | -0.237 | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
| 66.16 | 0.38 | 11.3 | -- | 1.49 | -- | -- | -- | -0.266 | 21.5 | -- | -- | -- | -- |
| 125.14 | 0.521 | 11.4 | -- | -- | 1.21 | -- | -- | -0.654 | -- | 25.7 | 694 | -- | -- |
| 196.75 | 0.655 | 11.3 | -- | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.91 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 3 | 47.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 21 |
| 18 | 47.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 19 | 47.91 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 19 |
| 33 | 48.40 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 19 |
| 36 | 48.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 42 | 48.53 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 67 | 49.06 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 17 |
| 76 | 49.18 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 22 |
| 96 | 49.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 17 |
| 179 | 50.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 190 | 50.35 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 194 | 50.38 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 196 | 50.39 | temperature | 25 | 720 | < th | dose dependent | sin | 23 | NA |
| 249 | 50.86 | temperature | 10 | 270 | > th | dose dependent | sin | 5 | NA |
| 258 | 50.94 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |
| 268 | 50.97 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 6 | 17 |
| 283 | 51.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 12 |
| 286 | 51.06 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 23 |
| 287 | 51.06 | temperature | 25 | 270 | < th | dose independent | rect. | 21 | 23 |
| 299 | 51.12 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 306 | 51.16 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 18 |
| 309 | 51.17 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 23 |
| 310 | 51.17 | temperature | 25 | 270 | < th | dose independent | rect. | 17 | 23 |
| 356 | 51.40 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 7 |
| 442 | 51.73 | wind | 5 | 270 | < th | dose independent | rect. | 8 | 20 |
| 448 | 51.78 | temperature | 25 | 270 | < th | dose independent | sin | 1 | NA |
| 458 | 51.85 | wind | 9 | 270 | < th | dose dependent | rect. | 7 | 21 |
| 499 | 52.01 | temperature | 30 | 10 | < th | dose dependent | sin | 23 | NA |
| 532 | 52.11 | wind | 7 | 90 | < th | dose independent | rect. | 7 | 23 |
| 544 | 52.16 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 8 |
| 614 | 52.38 | wind | 9 | 270 | < th | dose dependent | rect. | 9 | 18 |
| 615 | 52.39 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 652 | 52.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 668 | 52.55 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 6 |
| 674 | 52.56 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 711 | 52.69 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 754 | 52.81 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 770 | 52.85 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 21 |
| 780 | 52.88 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 19 |
| 795 | 52.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 826 | 52.97 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 855 | 53.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 865 | 53.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 877 | 53.05 | wind | 5 | 90 | < th | dose independent | rect. | 23 | 6 |
| 880 | 53.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 11 |
| 890 | 53.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 11 |
| 937 | 53.14 | temperature | 15 | 90 | > th | dose independent | rect. | 5 | 18 |
| 939 | 53.14 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 942 | 53.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 961 | 53.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 8 |