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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0484900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1210 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.55 (0.0528) R2 : 0.209
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.36 (0.139) R2dE : 0.168 R2E : 0.131
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.654 (0.111) R2dN8 : 0.0778 R2N8 : 0.0411
σ : 0.99
deviance : 452.12
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1.23
memory length : 41
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.58
open length of G : 6.77

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
440.91 0.987 3.55 -0.135 0.182 1.24 0.137 -1.71 -0.664 1.49 1.277 42 1.5 6.85
448.6 0.986 3.55 -0.161 0.125 1.24 -0.769 -- -0.651 4.3 1.284 41 1.58 6.81
440.97 0.978 3.55 -0.138 0.178 1.25 -- -1.66 -0.665 1.2 1.27 41 1.52 6.85
449.88 0.988 3.56 -0.133 0.18 1.31 -- -- -0.672 0.994 1.259 41 1.57 6.82
442.75 0.98 3.55 -0.127 -- 1.31 -- -1.64 -0.662 -- 1.254 41 1.51 6.83
493.06 1.04 3.52 -0.188 0.963 -- -1.47 -- -0.598 4.86 -- -- -- --
498.59 1.05 3.52 -0.184 0.952 -- -- -- -0.591 4.75 -- -- -- --
451.72 0.99 3.56 -0.135 -- 1.36 -- -- -0.674 -- 1.213 41 1.57 6.77
450.34 0.988 3.55 -- 0.175 1.32 -- -- -0.658 0.75 1.26 41 1.58 6.81
546.59 1.09 3.53 -0.148 -- -- -- -- -0.566 -- -- -- -- --
499.48 1.05 3.52 -- 0.949 -- -- -- -0.571 4.75 -- -- -- --
452.12 0.99 3.55 -- -- 1.36 -- -- -0.654 -- 1.23 41 1.58 6.77
547.17 1.09 3.53 -- -- -- -- -- -0.55 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 446.70 wind 1.0 30 > th dose independent rect. 1 7
2 447.31 temperature 30.0 270 < th dose dependent rect. 24 6
3 448.49 atmosphere 1000.0 270 > th dose independent rect. 4 23
6 449.45 temperature 30.0 270 < th dose dependent rect. 3 1
7 449.51 humidity 90.0 10 < th dose independent rect. 2 5
10 450.00 atmosphere 1000.0 270 > th dose independent rect. 7 17
18 451.87 wind 1.0 30 > th dose independent rect. 3 5
20 452.20 temperature 30.0 30 < th dose dependent rect. 3 5
22 452.81 atmosphere 1000.0 10 > th dose independent rect. 8 19
56 455.46 atmosphere 1000.0 270 > th dose independent rect. 20 14
58 455.55 atmosphere 1000.0 10 > th dose independent rect. 8 17
81 456.54 atmosphere 1000.0 270 > th dose independent rect. 19 6
82 456.54 atmosphere 1000.0 270 > th dose dependent rect. 3 1
83 456.62 temperature 10.0 270 > th dose dependent rect. 10 10
89 456.84 wind 1.0 270 > th dose independent rect. 24 19
91 456.91 wind 1.0 270 > th dose independent rect. 3 1
94 457.00 atmosphere 995.0 30 > th dose dependent rect. 8 19
109 457.82 precipitation 0.1 10 < th dose independent rect. 8 19
110 457.82 precipitation 0.1 10 < th dose dependent rect. 8 19
111 457.84 atmosphere 995.0 10 > th dose dependent rect. 3 5
126 458.48 radiation 20.0 30 < th dose independent rect. 3 5
128 458.49 wind 5.0 30 < th dose independent rect. 3 5
130 458.56 humidity 50.0 270 > th dose independent rect. 4 23
137 458.66 precipitation 0.1 90 < th dose independent rect. 8 17
138 458.66 precipitation 0.1 90 < th dose dependent rect. 8 17
141 458.73 atmosphere 1000.0 270 > th dose independent rect. 17 8
142 458.75 radiation 40.0 30 < th dose independent rect. 3 5
145 458.84 temperature 10.0 30 > th dose independent rect. 3 5
147 458.84 temperature 30.0 30 < th dose independent rect. 3 5
148 458.84 humidity 50.0 30 > th dose independent rect. 3 5
150 458.84 atmosphere 995.0 30 > th dose independent rect. 3 5
151 458.84 atmosphere 1015.0 30 < th dose independent rect. 3 5
152 458.84 temperature 10.0 30 > th dose independent rect. 8 19
164 458.91 precipitation 0.1 30 < th dose independent rect. 3 5
165 458.91 precipitation 0.1 30 < th dose dependent rect. 3 5
171 459.01 humidity 80.0 270 > th dose independent rect. 3 1
175 459.06 humidity 50.0 270 > th dose dependent rect. 7 17
179 459.23 wind 7.0 270 < th dose independent rect. 3 1
188 459.36 precipitation 0.1 270 < th dose independent rect. 4 23
189 459.36 precipitation 0.1 270 < th dose dependent rect. 4 23
190 459.37 wind 9.0 4320 < th dose independent rect. 4 5
192 459.40 wind 5.0 30 < th dose independent rect. 1 7
195 459.41 radiation 20.0 90 < th dose independent rect. 1 7
196 459.41 wind 9.0 30 < th dose independent rect. 8 19
197 459.42 humidity 50.0 270 > th dose independent rect. 6 18
200 459.47 precipitation 0.1 270 < th dose independent rect. 3 1
201 459.47 precipitation 0.1 270 < th dose dependent rect. 3 1
210 459.64 temperature 10.0 270 > th dose independent rect. 3 1
212 459.64 temperature 30.0 270 < th dose independent rect. 3 1
213 459.64 humidity 50.0 270 > th dose independent rect. 3 1
216 459.64 atmosphere 995.0 270 > th dose independent rect. 3 1
217 459.64 atmosphere 1010.0 270 < th dose independent rect. 3 1
219 459.64 radiation 1.0 270 < th dose independent rect. 3 1
224 459.64 temperature 10.0 270 > th dose independent rect. 4 23
225 459.64 radiation 1.0 270 < th dose dependent rect. 3 1
237 459.75 temperature 10.0 1440 > th dose independent rect. 4 5
240 459.75 humidity 50.0 1440 > th dose independent rect. 4 5
242 459.75 atmosphere 995.0 1440 > th dose independent rect. 4 5
243 459.75 atmosphere 1015.0 1440 < th dose independent rect. 4 5
244 459.75 temperature 10.0 1440 > th dose independent rect. 9 19
248 459.76 wind 1.0 10 > th dose independent rect. 8 17
250 459.80 wind 9.0 4320 < th dose independent rect. 2 7
260 459.97 radiation 40.0 270 < th dose dependent rect. 24 7
263 460.02 atmosphere 1000.0 10 > th dose independent rect. 20 7
264 460.05 radiation 40.0 90 < th dose independent rect. 1 7
265 460.05 temperature 30.0 30 < th dose independent rect. 8 19
270 460.11 temperature 10.0 90 > th dose independent rect. 1 7
272 460.11 temperature 30.0 90 < th dose independent rect. 1 7
273 460.11 humidity 50.0 90 > th dose independent rect. 1 7
275 460.11 atmosphere 995.0 90 > th dose independent rect. 1 7
276 460.11 atmosphere 1015.0 90 < th dose independent rect. 1 7
277 460.11 temperature 10.0 90 > th dose independent rect. 8 17
278 460.12 temperature 30.0 270 < th dose independent rect. 6 18
286 460.17 wind 1.0 30 > th dose independent rect. 12 20
296 460.19 temperature 10.0 1440 > th dose independent rect. 2 7
299 460.19 humidity 50.0 1440 > th dose independent rect. 2 7
301 460.19 atmosphere 995.0 1440 > th dose independent rect. 2 7
302 460.19 temperature 10.0 1440 > th dose independent rect. 9 17
307 460.20 radiation 10.0 270 < th dose independent rect. 13 12
334 460.25 radiation 10.0 270 < th dose dependent rect. 9 16
338 460.28 temperature 25.0 270 < th dose independent rect. 24 5
339 460.28 precipitation 0.1 90 < th dose independent rect. 1 7
340 460.28 precipitation 0.1 90 < th dose dependent rect. 1 7
350 460.42 temperature 30.0 1440 < th dose independent rect. 4 5
356 460.56 humidity 70.0 270 > th dose independent rect. 7 17
359 460.60 radiation 40.0 30 < th dose dependent rect. 3 5
363 460.65 radiation 20.0 270 < th dose dependent rect. 13 12
372 460.86 wind 9.0 270 < th dose independent rect. 11 9
375 460.90 wind 9.0 30 < th dose independent rect. 8 17
376 460.91 atmosphere 1000.0 10 > th dose independent rect. 22 14
377 460.93 temperature 30.0 1440 < th dose independent rect. 2 7
386 461.08 atmosphere 1000.0 90 > th dose independent rect. 22 14
393 461.14 wind 1.0 270 > th dose independent rect. 11 9
395 461.17 atmosphere 995.0 270 > th dose dependent rect. 19 6
396 461.17 atmosphere 995.0 10 > th dose dependent rect. 1 7
401 461.23 wind 1.0 30 > th dose independent rect. 1 21
406 461.30 atmosphere 1000.0 10 > th dose independent rect. 22 5
415 461.37 atmosphere 995.0 30 > th dose dependent rect. 8 17
427 461.48 temperature 30.0 90 < th dose independent rect. 8 17
450 461.61 humidity 50.0 270 > th dose independent rect. 5 20
454 461.66 precipitation 0.1 270 < th dose independent rect. 20 15
457 461.66 precipitation 0.1 270 < th dose dependent rect. 20 15
493 462.01 temperature 15.0 270 > th dose independent rect. 11 9
504 462.16 temperature 20.0 10 < th dose independent rect. 2 4
517 462.25 atmosphere 995.0 270 > th dose dependent rect. 17 8
520 462.26 atmosphere 1015.0 270 < th dose independent rect. 11 9
521 462.26 temperature 10.0 270 > th dose independent rect. 20 15
523 462.26 wind 9.0 10 < th dose dependent rect. 3 5
531 462.30 wind 1.0 30 > th dose independent rect. 3 17
533 462.31 wind 1.0 30 > th dose independent rect. 14 18
541 462.33 atmosphere 995.0 30 > th dose dependent rect. 20 7
549 462.39 temperature 20.0 90 < th dose independent rect. 3 2
551 462.39 atmosphere 995.0 270 > th dose dependent rect. 24 6
553 462.39 atmosphere 995.0 270 > th dose dependent rect. 6 19
558 462.42 humidity 50.0 30 > th dose independent rect. 8 19
570 462.50 humidity 50.0 270 > th dose independent rect. 20 15
571 462.50 wind 1.0 30 > th dose independent rect. 1 19
593 462.66 wind 9.0 270 < th dose independent rect. 20 15
608 462.75 precipitation 0.1 270 < th dose independent rect. 11 9
610 462.75 precipitation 0.1 270 < th dose dependent rect. 11 9
631 462.93 wind 1.0 270 > th dose independent rect. 12 18
655 463.06 humidity 70.0 270 > th dose independent rect. 14 11
687 463.21 radiation 1.0 90 < th dose dependent rect. 5 3
748 463.43 humidity 90.0 270 < th dose independent rect. 11 8
784 463.58 wind 9.0 270 < th dose independent rect. 24 19
803 463.68 atmosphere 995.0 270 > th dose dependent rect. 1 4
804 463.68 humidity 90.0 30 < th dose dependent rect. 2 5
807 463.70 humidity 80.0 10 > th dose independent rect. 18 9
814 463.75 wind 1.0 270 > th dose independent rect. 13 16
822 463.81 wind 1.0 270 > th dose independent rect. 19 5
846 463.91 wind 1.0 30 > th dose independent rect. 3 19
891 464.09 humidity 50.0 270 > th dose dependent rect. 16 9
911 464.18 atmosphere 1015.0 30 < th dose independent rect. 8 19
914 464.18 humidity 50.0 30 > th dose dependent rect. 8 19
945 464.28 humidity 50.0 30 > th dose dependent rect. 3 5
971 464.38 temperature 30.0 270 < th dose independent rect. 17 8
993 464.42 humidity 50.0 270 > th dose dependent rect. 3 1