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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0484200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Actin-depolymerizing factor 1 (ADF 1) (ZmABP1) (ZmADF1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.3 (0.023) R2 : 0.00204
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0467 (0.0484) R2dN8 : 0.00264 R2N8 : 0.00204
σ : 0.433
deviance : 85.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.48 0.424 3.29 0.0849 0.0957 0.134 -0.144 1.09 -0.0372 7.93 40.2 11 -- --
83.96 0.427 3.29 0.118 0.0968 0.145 0.202 -- -0.0242 8.25 38.84 12 -- --
81.53 0.421 3.29 0.0827 0.0968 0.131 -- 1.05 -0.0359 8.09 40.68 11 -- --
84.03 0.427 3.29 0.115 0.0963 0.154 -- -- -0.0317 7.74 38.86 12 -- --
82.01 0.422 3.29 0.0824 -- 0.159 -- 1.05 -0.0357 -- 40.65 11 -- --
84.45 0.431 3.29 0.104 0.12 -- 0.266 -- -0.0347 10.1 -- -- -- --
84.69 0.431 3.29 0.113 0.124 -- -- -- -0.0348 9.22 -- -- -- --
84.51 0.428 3.29 0.118 -- 0.176 -- -- -0.0303 -- 38.91 12 -- --
84.38 0.428 3.29 -- 0.098 0.152 -- -- -0.045 7.68 38.81 12 -- --
85.59 0.432 3.29 0.113 -- -- -- -- -0.0342 -- -- -- -- --
85.03 0.431 3.29 -- 0.124 -- -- -- -0.0474 9.15 -- -- -- --
84.88 0.429 3.3 -- -- 0.173 -- -- -0.0434 -- 38.96 12 -- --
85.92 0.433 3.3 -- -- -- -- -- -0.0467 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.44 atmosphere 995.0 30 > th dose independent rect. 21 23
5 76.78 radiation 10.0 4320 < th dose dependent rect. 21 1
8 76.82 radiation 10.0 43200 < th dose dependent rect. 21 1
10 76.83 atmosphere 1005.0 30 > th dose independent rect. 20 1
14 76.85 temperature 10.0 1440 > th dose independent rect. 21 1
17 76.85 temperature 30.0 1440 < th dose independent rect. 21 1
21 76.85 humidity 50.0 1440 > th dose independent rect. 21 1
27 76.85 humidity 90.0 30 < th dose independent rect. 20 1
29 76.85 atmosphere 995.0 1440 > th dose independent rect. 21 1
30 76.85 radiation 1.0 1440 < th dose independent rect. 21 1
50 76.85 temperature 10.0 1440 > th dose independent rect. 22 23
53 76.85 humidity 90.0 30 < th dose dependent rect. 20 1
57 76.86 atmosphere 1000.0 30 > th dose dependent rect. 20 1
58 76.87 wind 3.0 30 > th dose independent rect. 20 1
59 76.87 wind 1.0 30 > th dose dependent rect. 20 1
64 76.88 temperature 20.0 30 > th dose independent rect. 20 1
65 76.88 temperature 30.0 30 < th dose dependent rect. 20 1
68 76.89 wind 5.0 30 < th dose independent rect. 20 1
71 76.89 temperature 10.0 30 > th dose independent rect. 20 1
73 76.89 temperature 30.0 30 < th dose independent rect. 20 1
74 76.89 humidity 50.0 30 > th dose independent rect. 20 1
77 76.89 atmosphere 995.0 30 > th dose independent rect. 20 1
79 76.89 atmosphere 1010.0 30 < th dose independent rect. 20 1
81 76.89 radiation 1.0 30 < th dose independent rect. 20 1
86 76.89 precipitation 0.1 30 < th dose independent rect. 20 1
87 76.89 temperature 10.0 30 > th dose independent rect. 21 23
88 76.89 radiation 1.0 30 < th dose dependent rect. 20 1
94 76.89 precipitation 0.1 30 < th dose dependent rect. 20 1
96 76.90 temperature 10.0 30 > th dose dependent rect. 20 1
98 76.91 wind 9.0 30 < th dose dependent rect. 20 1
100 76.91 humidity 50.0 30 > th dose dependent rect. 20 1
112 76.95 atmosphere 1015.0 30 < th dose dependent rect. 20 1
115 76.99 wind 9.0 30 < th dose independent rect. 21 23
171 77.39 precipitation 0.1 30 < th dose independent rect. 21 23
172 77.39 precipitation 0.1 30 < th dose dependent rect. 21 23
179 77.96 atmosphere 1005.0 90 > th dose dependent rect. 2 1
181 78.02 temperature 20.0 30 > th dose dependent rect. 2 1
182 78.07 temperature 20.0 30 > th dose independent rect. 2 1
183 78.08 atmosphere 1005.0 30 > th dose independent rect. 2 1
186 78.09 radiation 1.0 14400 < th dose dependent rect. 3 1
194 78.16 wind 3.0 30 < th dose independent rect. 2 1
195 78.16 precipitation 0.1 1440 < th dose independent rect. 21 1
196 78.16 precipitation 0.1 1440 < th dose dependent rect. 21 1
198 78.18 wind 5.0 30 < th dose dependent rect. 2 1
204 78.20 humidity 50.0 30 > th dose dependent rect. 2 1
208 78.21 temperature 10.0 30 > th dose independent rect. 2 1
210 78.21 temperature 30.0 30 < th dose independent rect. 2 1
211 78.21 humidity 50.0 30 > th dose independent rect. 2 1
216 78.21 atmosphere 1010.0 30 < th dose independent rect. 2 1
218 78.21 radiation 1.0 30 < th dose independent rect. 2 1
223 78.21 precipitation 0.1 30 < th dose independent rect. 2 1
224 78.21 temperature 10.0 30 > th dose independent rect. 3 23
225 78.21 radiation 1.0 30 < th dose dependent rect. 2 1
230 78.21 precipitation 0.1 30 < th dose dependent rect. 2 1
237 78.43 atmosphere 1015.0 30 < th dose dependent rect. 2 1
242 78.47 wind 1.0 30 > th dose independent rect. 2 1
246 78.49 temperature 30.0 30 < th dose dependent rect. 2 1
248 78.50 humidity 50.0 30 > th dose independent rect. 21 23
251 78.51 wind 9.0 1440 < th dose independent rect. 3 1
252 78.51 temperature 10.0 1440 > th dose independent rect. 3 1
255 78.51 temperature 30.0 1440 < th dose independent rect. 3 1
259 78.51 humidity 50.0 1440 > th dose independent rect. 3 1
268 78.51 atmosphere 995.0 1440 > th dose independent rect. 3 1
269 78.51 radiation 1.0 1440 < th dose independent rect. 3 1
289 78.51 temperature 10.0 1440 > th dose independent rect. 4 23
306 78.60 atmosphere 1000.0 30 > th dose independent rect. 3 23
311 78.66 wind 9.0 1440 < th dose independent rect. 21 1
314 78.70 humidity 80.0 14400 < th dose dependent rect. 5 4
315 78.71 humidity 80.0 14400 < th dose dependent rect. 7 2
319 78.73 humidity 70.0 14400 > th dose independent rect. 8 1
328 78.84 temperature 10.0 30 > th dose dependent rect. 21 23
334 78.91 humidity 70.0 14400 > th dose independent rect. 4 5
350 78.96 humidity 70.0 14400 < th dose independent rect. 8 1
398 79.22 precipitation 0.1 30 < th dose independent rect. 3 23
399 79.22 precipitation 0.1 30 < th dose dependent rect. 3 23
402 79.24 humidity 70.0 14400 < th dose independent rect. 21 12
404 79.25 humidity 70.0 14400 < th dose independent rect. 6 3
413 79.25 wind 1.0 10 > th dose independent rect. 21 23
424 79.43 wind 9.0 30 < th dose independent rect. 3 23
433 79.61 radiation 40.0 30 < th dose independent rect. 21 23
494 79.97 wind 1.0 14400 < th dose dependent rect. 6 1
498 80.05 humidity 50.0 14400 > th dose independent rect. 15 1
510 80.11 wind 1.0 14400 < th dose dependent rect. 4 3
513 80.12 temperature 15.0 30 > th dose dependent rect. 3 17
532 80.16 humidity 60.0 14400 < th dose dependent rect. 12 1
579 80.30 wind 1.0 14400 < th dose independent rect. 6 1
588 80.31 humidity 50.0 30 > th dose independent rect. 3 23
601 80.36 humidity 90.0 90 < th dose independent rect. 2 1
610 80.42 humidity 60.0 14400 < th dose dependent rect. 10 6
611 80.43 humidity 60.0 14400 < th dose dependent rect. 12 3
643 80.50 wind 1.0 14400 > th dose independent rect. 5 2
646 80.51 humidity 60.0 14400 < th dose dependent rect. 14 1
672 80.57 humidity 60.0 14400 < th dose dependent sin 5 NA
674 80.58 humidity 60.0 14400 < th dose independent rect. 10 2
692 80.59 atmosphere 1015.0 30 < th dose independent rect. 21 23
751 80.67 temperature 25.0 720 > th dose dependent rect. 3 5
756 80.70 temperature 30.0 30 < th dose independent rect. 21 23
772 80.75 radiation 40.0 30 < th dose independent rect. 2 12
779 80.76 humidity 50.0 14400 > th dose independent rect. 13 7
791 80.76 humidity 50.0 14400 > th dose independent rect. 13 17
820 80.78 temperature 25.0 10 > th dose independent rect. 23 21
829 80.79 wind 1.0 14400 < th dose dependent rect. 4 7
854 80.82 temperature 10.0 30 > th dose dependent rect. 3 23
855 80.83 humidity 60.0 14400 < th dose dependent no NA NA