Os07g0482900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0482900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 503.85 | 1.05 | 5.54 | 4.08 | 0.872 | -4.07 | -0.24 | -1.98 | 1.67 | 13.9 | 27.24 | 5397 | -- | -- |
| 505 | 1.05 | 5.48 | 4.55 | 0.863 | -4.12 | -0.179 | -- | 1.8 | 13.8 | 27.6 | 5412 | -- | -- |
| 503.51 | 1.05 | 5.53 | 4.11 | 0.859 | -4 | -- | -1.72 | 1.69 | 13.9 | 27.4 | 5414 | -- | -- |
| 505.1 | 1.05 | 5.47 | 4.57 | 0.872 | -4.12 | -- | -- | 1.81 | 13.9 | 27.59 | 5412 | -- | -- |
| 548.13 | 1.09 | 5.55 | 4.02 | -- | -4.09 | -- | -2.08 | 1.66 | -- | 27.47 | 5421 | -- | -- |
| 1056.12 | 1.52 | 5.62 | 2.98 | 1.25 | -- | 0.345 | -- | 1.14 | 13.5 | -- | -- | -- | -- |
| 1056.59 | 1.52 | 5.62 | 3 | 1.25 | -- | -- | -- | 1.14 | 13.4 | -- | -- | -- | -- |
| 550.12 | 1.09 | 5.48 | 4.6 | -- | -4.26 | -- | -- | 1.82 | -- | 27.55 | 5420 | -- | -- |
| 956.51 | 1.44 | 5.64 | -- | 1.15 | -2.51 | -- | -- | 1.12 | 13.6 | 28.8 | 5951 | -- | -- |
| 1152.5 | 1.59 | 5.63 | 2.95 | -- | -- | -- | -- | 1.12 | -- | -- | -- | -- | -- |
| 1293.03 | 1.68 | 5.69 | -- | 1.2 | -- | -- | -- | 0.809 | 13.4 | -- | -- | -- | -- |
| 1011.8 | 1.48 | 5.69 | -- | -- | -3.23 | -- | -- | 0.811 | -- | 29 | 4315 | -- | -- |
| 1381.37 | 1.73 | 5.71 | -- | -- | -- | -- | -- | 0.789 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 510.24 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 21 |
| 10 | 511.06 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 19 |
| 11 | 511.09 | temperature | 25 | 14400 | > th | dose dependent | rect. | 6 | 17 |
| 26 | 511.43 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 22 |
| 27 | 511.46 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 52 | 511.80 | temperature | 25 | 14400 | > th | dose dependent | rect. | 15 | 7 |
| 69 | 512.03 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 10 |
| 72 | 512.05 | temperature | 25 | 14400 | > th | dose dependent | no | NA | NA |
| 83 | 512.15 | temperature | 25 | 14400 | > th | dose dependent | rect. | 16 | 5 |
| 98 | 512.37 | temperature | 25 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 108 | 512.47 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 109 | 512.49 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 120 | 512.73 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 122 | 512.75 | temperature | 25 | 14400 | > th | dose dependent | sin | 17 | NA |
| 140 | 512.99 | temperature | 25 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 182 | 513.57 | temperature | 25 | 14400 | > th | dose dependent | sin | 5 | NA |
| 218 | 513.99 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 294 | 515.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 5 |
| 342 | 515.76 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 370 | 516.47 | temperature | 30 | 14400 | < th | dose independent | rect. | 2 | 14 |
| 371 | 516.47 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 19 |
| 374 | 516.48 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 380 | 516.50 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 456 | 517.82 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 473 | 517.86 | temperature | 30 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 480 | 517.97 | temperature | 25 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 540 | 518.99 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 541 | 519.01 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 545 | 519.09 | temperature | 25 | 14400 | > th | dose independent | rect. | 16 | 16 |
| 547 | 519.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 16 |
| 551 | 519.14 | temperature | 30 | 14400 | < th | dose independent | rect. | 13 | 10 |
| 565 | 519.23 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 620 | 520.35 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 631 | 520.52 | temperature | 30 | 14400 | < th | dose independent | sin | 22 | NA |
| 638 | 520.61 | temperature | 25 | 14400 | < th | dose independent | sin | 13 | NA |
| 735 | 521.47 | temperature | 25 | 14400 | > th | dose independent | sin | 13 | NA |
| 738 | 521.47 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 746 | 521.47 | temperature | 30 | 14400 | < th | dose independent | rect. | 7 | 22 |
| 768 | 521.49 | temperature | 30 | 14400 | < th | dose independent | no | NA | NA |
| 772 | 521.49 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 15 |
| 840 | 521.83 | temperature | 30 | 14400 | > th | dose independent | sin | 22 | NA |
| 957 | 522.78 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |