BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0482900 Os07g0482900|Os07g0482900
(187 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G03500.1 | chr4:1553453-1556571 FORWARD LENGTH=653 56 9e-09
AT4G03460.1 | chr4:1536404-1540111 REVERSE LENGTH=678 56 1e-08
AT4G03490.2 | chr4:1549345-1552754 REVERSE LENGTH=691 55 3e-08
AT4G03470.1 | chr4:1542059-1544283 REVERSE LENGTH=684 50 6e-07
AT1G03670.1 | chr1:914222-916222 REVERSE LENGTH=617 50 7e-07
AT2G31820.1 | chr2:13530350-13532562 FORWARD LENGTH=663 50 7e-07
AT5G60070.1 | chr5:24190440-24192570 REVERSE LENGTH=549 50 7e-07
AT4G03480.1 | chr4:1546024-1548871 REVERSE LENGTH=660 49 1e-06
AT5G54700.1 | chr5:22223096-22225509 REVERSE LENGTH=481 49 2e-06
AT5G54610.1 | chr5:22184781-22186481 REVERSE LENGTH=427 48 2e-06
AT3G12360.1 | chr3:3934146-3936495 FORWARD LENGTH=591 47 6e-06
>AT4G03500.1 | chr4:1553453-1556571 FORWARD LENGTH=653
Length = 652
Score = 56.2 bits (134), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Query: 70 LLKANEFAAYQPDNQGMYPIHAAASAGSLETVKILLEKHPDCATLRDARGRTFLHAAVEK 129
L N Y D+ G++P H AA G ++ ++ +L+ P+ L D G+ LH A +
Sbjct: 299 LFDKNRDKVYVSDDDGLFPTHMAAKYGHVQILEEILKHCPEAIELLDRDGQNILHLAAKY 358
Query: 130 KRFGVVKYV---CHWKRKERFALILNAQDNNGDTALSMLEI 167
+ V+K++ C K K++ ++N QD NG+T L + I
Sbjct: 359 GKLKVIKFILSCCKDKNKKK---LINEQDVNGNTPLHLATI 396
>AT4G03460.1 | chr4:1536404-1540111 REVERSE LENGTH=678
Length = 677
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 50/91 (54%), Gaps = 6/91 (6%)
Query: 77 AAYQPDNQGMYPIHAAASAGSLETVKILLEKHPDCATLRDARGRTFLHAAVEKKRFGVVK 136
+ Y D+ G +PIH A G ++ +K +L++ PD L D + LH A + + V+K
Sbjct: 342 SVYVSDDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLK 401
Query: 137 YV---CHWKRKERFALILNAQDNNGDTALSM 164
++ C K KE+ ++N +D NG+T L +
Sbjct: 402 FILRCCKDKNKEK---LINEEDANGNTPLHL 429
>AT4G03490.2 | chr4:1549345-1552754 REVERSE LENGTH=691
Length = 690
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 68/154 (44%), Gaps = 25/154 (16%)
Query: 16 DELLARLSSQRD-----NDNGSTPLHLAASINGLPSALYIPICSPRVLAPLRRPKPVELL 70
D L A L S D +++G TPL AASI I +L V
Sbjct: 201 DILTAVLESDSDLVESRDEDGRTPLATAASIG-------YDIGVQHMLTRFASSTQV--- 250
Query: 71 LKANEFAAYQPDNQGMYPIHAAASAGSLETVKILLEKHPDCATLRDARGRTFLHAAVEKK 130
AY + G +PIH+A SA +K++L+ HPD + +++G+ LH A +
Sbjct: 251 -------AYIKNEDGSFPIHSACSARCTSALKVILKHHPDTIEMLNSQGQNVLHVAAKS- 302
Query: 131 RFGVVKYVCHWKRKERFALILNAQDNNGDTALSM 164
G + V + RK ++N QD G+T L +
Sbjct: 303 --GNARAVGYLLRKSDVKRLINEQDIEGNTPLHL 334
>AT4G03470.1 | chr4:1542059-1544283 REVERSE LENGTH=684
Length = 683
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 65 KPVELLLKANEFAAYQPDNQGMYPIHAAASAGSLETVKILLEKHPDCATLRDARGRTFLH 124
K V LL + + D+ G YPIH A G ++ VK + ++ P L + +G+ LH
Sbjct: 318 KGVCNLLNRSRKGVFVCDDDGSYPIHLAVEKGRIKVVKEICKRCPYSKLLLNKKGQNLLH 377
Query: 125 AAVEKKRFGVVKYVCHWKRKERFALILNAQDNNGDTALSMLEI 167
A E +F +++ H E+ + N +D +G+T L + I
Sbjct: 378 IAAESGKFRILR---HLTAHEQINHLANEKDVDGNTPLHLATI 417
>AT1G03670.1 | chr1:914222-916222 REVERSE LENGTH=617
Length = 616
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 72 KANEFAAYQPDNQGMYPIHAAASAGSLETVKILLEKHPDCATLRDARGRTFLHAAVEKKR 131
KA Y D+ G PIH AA G + +K L+ PD L + + + H A +
Sbjct: 274 KAASSLCYVADDDGFTPIHMAAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGK 333
Query: 132 FGVVKYVCHWKRKERFALILNAQDNNGDTALSM 164
VVKY+ +R ++N QD NG+T L +
Sbjct: 334 SKVVKYLLKLDEGKR---MMNEQDINGNTPLHL 363
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 52 ICSPRVLAPLRRPKPVELLLKANEFAAYQP---DNQGMYPIHAAASAGSLETVKILLEKH 108
I +P +L +R V LL + N+ DNQG +H AA+ G + V+ ++
Sbjct: 36 IMNPAILCAVRAGDKVSLLKRINDDVKVTQRLVDNQGNSILHIAAALGHVHIVEFIISTF 95
Query: 109 PDCATLRDARGRTFLHAAVEKKRFGVVKYVCHW-KRKERFALILNAQDNNGDTAL 162
P+ + G T LH A +V+ + + + + A+ NGDTAL
Sbjct: 96 PNLLQNVNLMGETTLHVAARAGSLNIVEILVRFITESSSYDAFIAAKSKNGDTAL 150
>AT2G31820.1 | chr2:13530350-13532562 FORWARD LENGTH=663
Length = 662
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 67 VELLLKANEFAAYQPDNQGMYPIHAAASAGSLETVKILLEKHPDCATLRDARGRTFLHAA 126
V LLL+ + A N G +H+AA G +E VK L+ K P D +G+T LH A
Sbjct: 274 VNLLLETDSNLAKIAKNNGKTALHSAARMGHVEVVKSLIGKDPSIGFRTDKKGQTALHMA 333
Query: 127 VEKKRFGVVKYVCHWKRKERFALILNAQDNNGDTAL 162
V+ + G+V + +L+ +DN G+T L
Sbjct: 334 VKGQNDGIVVELVKPD-----VAVLSVEDNKGNTPL 364
>AT5G60070.1 | chr5:24190440-24192570 REVERSE LENGTH=549
Length = 548
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 8/98 (8%)
Query: 67 VELLLKA--NEFAAYQPDNQGMYPIHAAASAGSLETVKILLEKHPDCATLRDARGRTFLH 124
VE LL+A + AA N G +H+AA G E VK ++ PD AT D +G+T LH
Sbjct: 158 VEYLLEAAGSSLAAIAKSN-GKTALHSAARNGHAEVVKAIVAVEPDTATRTDKKGQTPLH 216
Query: 125 AAVEKKRFGVVKYVCHWKRKERFALILNAQDNNGDTAL 162
AV+ + VV + R LN D+ G+TAL
Sbjct: 217 MAVKGQSIDVVVELMKGHRSS-----LNMADSKGNTAL 249
>AT4G03480.1 | chr4:1546024-1548871 REVERSE LENGTH=660
Length = 659
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
Query: 70 LLKANEFAAYQPDNQGMYPIHAAASAGSLETVKILLEKHPDCATLRDARGRTFLHAAVEK 129
LL + + Y+ D G +PIH A G L+ VK +L++ PD L + +G+ LH A +
Sbjct: 409 LLDRSTKSVYECDKDGSFPIHMAVEKGHLKVVKEILKRCPDSKELVNKQGQNMLHIAAKS 468
Query: 130 KRFGVVKYVCHWKRKERFALILNAQDNNGDTALSMLEI 167
+ G + + +R + ++ QD +G+ L + I
Sbjct: 469 AKVGSF-LLGYIRRLDTENHLIEEQDVDGNAPLHLATI 505
>AT5G54700.1 | chr5:22223096-22225509 REVERSE LENGTH=481
Length = 480
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 9/155 (5%)
Query: 25 QRDNDN-GSTPLHLAASINGLPSALYIPICSPRVLAPLRRPKPVELLLKANEFAAYQPDN 83
+RD +N G + LHL I A I P + PL VE LK E +N
Sbjct: 30 ERDKENNGESVLHLVTKIGHQEFAKTIIGICPSLSTPLDDISEVENDLKLAELV----NN 85
Query: 84 QGMYPIHAAASAGSLETVKILLEKHPDCA-TLRDARGRTFLHAAVEKKRFGVVKYVCHWK 142
G+ P+H AA + S++ +K+ K P L T H AV K K++
Sbjct: 86 DGLTPLHCAAVSNSIKILKVFSHKTPSSFDILTQPHNETVFHLAVRHKNLKAFKFMAQKV 145
Query: 143 RKERFALILNAQDNNGDTALSMLEILESSDALFGV 177
E+ +L D G+T L L S+ L V
Sbjct: 146 HLEK---LLYKPDKYGNTVLHTAASLGSTSGLAAV 177
>AT5G54610.1 | chr5:22184781-22186481 REVERSE LENGTH=427
Length = 426
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 61/151 (40%), Gaps = 19/151 (12%)
Query: 33 TPLHLAASINGLPSALYIPICSPRV--------LAPLRRPKPVELLLKANEFAAYQPD-- 82
TPLH A+S L A+ + I P L+PL + + A E P
Sbjct: 39 TPLHEASSAGKLDLAMELMILKPSFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLV 98
Query: 83 ----NQGMYPIHAAASAGSLETVKILLEKHPDCATLRDARGRTFLHAAVEKKRFGVVKYV 138
GM P+H A G ++ + L P+ + G T LH + ++ +K +
Sbjct: 99 RIRGRGGMTPLHLVAKKGDVDLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVL 158
Query: 139 CHWKRKER-----FALILNAQDNNGDTALSM 164
W +K R F +LN +D G+T L +
Sbjct: 159 TGWMQKMRDSDDVFIDVLNRRDRGGNTVLHL 189
>AT3G12360.1 | chr3:3934146-3936495 FORWARD LENGTH=591
Length = 590
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 80/196 (40%), Gaps = 43/196 (21%)
Query: 6 GGDHRHVAADDELL---ARLSSQRDNDNGSTPLHLAASINGLPSALYIPI---------- 52
D H+ ELL +R S + N +G PLH+AA I G + + + +
Sbjct: 136 AADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAA-IQGHHAIVEVLLDHDATLSQTF 194
Query: 53 ----CSPRVLAPLRRPKPV--ELLLKANEFAAYQPDNQGMYPIHAAASAGSLETVKILLE 106
+P V A +R V +LL KA N +H AA G +E +K LL
Sbjct: 195 GPSNATPLVSAAMRGHTEVVNQLLSKAGNLLEISRSNNK-NALHLAARQGHVEVIKALLS 253
Query: 107 KHPDCATLRDARGRTFLHAAVEKKRFGVVKYV--------------CHW--------KRK 144
K P A D +G+T LH AV+ + VVK + C+ KR
Sbjct: 254 KDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRA 313
Query: 145 ERFALILNAQDNNGDT 160
E L+L+ D N +T
Sbjct: 314 EIVELLLSLPDTNANT 329
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,031,255
Number of extensions: 160240
Number of successful extensions: 678
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 679
Number of HSP's successfully gapped: 16
Length of query: 187
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 94
Effective length of database: 8,556,881
Effective search space: 804346814
Effective search space used: 804346814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)