Os07g0472500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Myosin heavy chain-like protein (Fragment).
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Os07g0472500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Myosin heavy chain-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.13 | 0.266 | 7.6 | 0.282 | 0.892 | 0.816 | -0.525 | -0.768 | 0.237 | 4.47 | 27.98 | 131 | -- | -- |
| 32.63 | 0.266 | 7.62 | 0.174 | 0.907 | 0.821 | -0.714 | -- | 0.207 | 4.13 | 27.6 | 220 | -- | -- |
| 32.7 | 0.266 | 7.59 | 0.337 | 0.893 | 0.805 | -- | -1.08 | 0.251 | 4.54 | 28.03 | 138 | -- | -- |
| 34.24 | 0.273 | 7.61 | 0.159 | 0.912 | 0.829 | -- | -- | 0.212 | 4.33 | 26.92 | 226 | -- | -- |
| 62.02 | 0.367 | 7.57 | 0.555 | -- | 1.61 | -- | -1.35 | 0.369 | -- | 30.85 | 171 | -- | -- |
| 42.64 | 0.306 | 7.66 | -0.0646 | 1.12 | -- | -0.751 | -- | 0.0248 | 4.19 | -- | -- | -- | -- |
| 44.19 | 0.311 | 7.65 | -0.0565 | 1.11 | -- | -- | -- | 0.0289 | 4.27 | -- | -- | -- | -- |
| 63.01 | 0.37 | 7.59 | 0.376 | -- | 1.6 | -- | -- | 0.372 | -- | 29.85 | 175 | -- | -- |
| 34.89 | 0.275 | 7.62 | -- | 0.926 | 0.805 | -- | -- | 0.196 | 4.26 | 26.82 | 254 | -- | -- |
| 111.24 | 0.493 | 7.66 | -0.012 | -- | -- | -- | -- | 0.0585 | -- | -- | -- | -- | -- |
| 44.27 | 0.311 | 7.65 | -- | 1.11 | -- | -- | -- | 0.0352 | 4.27 | -- | -- | -- | -- |
| 66.24 | 0.379 | 7.61 | -- | -- | 1.49 | -- | -- | 0.298 | -- | 29.98 | 173 | -- | -- |
| 111.24 | 0.492 | 7.66 | -- | -- | -- | -- | -- | 0.0598 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.33 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 7 | 30.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 10 | 22 |
| 10 | 30.69 | temperature | 30 | 270 | < th | dose dependent | sin | 8 | NA |
| 13 | 30.75 | temperature | 30 | 90 | < th | dose dependent | sin | 6 | NA |
| 16 | 30.85 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 27 | 31.09 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 13 |
| 28 | 31.11 | temperature | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 32 | 31.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 74 | 31.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 97 | 31.68 | temperature | 20 | 270 | < th | dose independent | rect. | 24 | 21 |
| 98 | 31.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 201 | 32.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 211 | 32.36 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 14 |
| 212 | 32.36 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 22 |
| 218 | 32.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 221 | 32.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 227 | 32.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 231 | 32.42 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 279 | 32.58 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 282 | 32.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 299 | 32.64 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 321 | 32.70 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 325 | 32.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 330 | 32.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 332 | 32.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 361 | 32.79 | temperature | 20 | 270 | < th | dose independent | sin | 4 | NA |
| 408 | 32.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 18 |
| 418 | 32.88 | temperature | 25 | 1440 | < th | dose dependent | sin | 17 | NA |
| 441 | 32.91 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 470 | 32.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 555 | 33.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 573 | 33.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 17 |
| 592 | 33.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 611 | 33.09 | temperature | 20 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 634 | 33.11 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 669 | 33.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 749 | 33.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 771 | 33.22 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 23 |
| 792 | 33.23 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 883 | 33.28 | temperature | 20 | 4320 | < th | dose independent | rect. | 12 | 13 |
| 888 | 33.28 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 9 |
| 899 | 33.29 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 936 | 33.31 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 961 | 33.32 | temperature | 20 | 4320 | > th | dose independent | rect. | 12 | 13 |