Os07g0470700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAP fibrillin family protein.
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Os07g0470700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAP fibrillin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.77 | 0.265 | 12.4 | -1.61 | 0.784 | 0.514 | 0.207 | -1.08 | -0.444 | 7.99 | 29.6 | 310 | -- | -- |
| 32 | 0.263 | 12.4 | -1.63 | 0.772 | 0.404 | 0.172 | -- | -0.447 | 8.12 | 28.7 | 369 | -- | -- |
| 31.89 | 0.263 | 12.4 | -1.61 | 0.782 | 0.517 | -- | -0.971 | -0.445 | 8.02 | 29.6 | 310 | -- | -- |
| 31.6 | 0.262 | 12.4 | -1.69 | 0.733 | 0.404 | -- | -- | -0.414 | 8.27 | 28.3 | 337 | -- | -- |
| 51.14 | 0.333 | 12.4 | -1.53 | -- | 0.894 | -- | -0.607 | -0.327 | -- | 28.2 | 521 | -- | -- |
| 35.92 | 0.281 | 12.4 | -1.79 | 0.93 | -- | 0.395 | -- | -0.472 | 7.44 | -- | -- | -- | -- |
| 36.34 | 0.282 | 12.4 | -1.78 | 0.93 | -- | -- | -- | -0.473 | 7.46 | -- | -- | -- | -- |
| 51.36 | 0.334 | 12.4 | -1.61 | -- | 0.864 | -- | -- | -0.351 | -- | 28.3 | 521 | -- | -- |
| 104.47 | 0.476 | 12.3 | -- | 0.549 | 0.719 | -- | -- | -0.169 | 9.26 | 27.52 | 435 | -- | -- |
| 82.48 | 0.424 | 12.4 | -1.76 | -- | -- | -- | -- | -0.458 | -- | -- | -- | -- | -- |
| 119.79 | 0.512 | 12.3 | -- | 0.914 | -- | -- | -- | -0.274 | 7.59 | -- | -- | -- | -- |
| 117.72 | 0.505 | 12.3 | -- | -- | 1.02 | -- | -- | -0.164 | -- | 27.75 | 532 | -- | -- |
| 164.65 | 0.599 | 12.4 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.28 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 11 | 6 |
| 7 | 30.60 | radiation | 30.0 | 270 | > th | dose independent | rect. | 12 | 21 |
| 10 | 30.63 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 17 | 30.79 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 12 | 6 |
| 34 | 30.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 17 |
| 42 | 30.91 | radiation | 20.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 73 | 30.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 11 | 6 |
| 74 | 30.93 | radiation | 20.0 | 270 | < th | dose independent | rect. | 14 | 10 |
| 76 | 30.96 | radiation | 1.0 | 270 | > th | dose dependent | sin | 16 | NA |
| 80 | 30.98 | radiation | 40.0 | 270 | < th | dose dependent | sin | 17 | NA |
| 89 | 31.01 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 14 | 9 |
| 104 | 31.09 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 23 |
| 133 | 31.14 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 135 | 31.15 | radiation | 20.0 | 270 | > th | dose independent | sin | 15 | NA |
| 142 | 31.16 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 8 |
| 145 | 31.17 | wind | 1.0 | 1440 | > th | dose independent | rect. | 23 | 1 |
| 179 | 31.20 | humidity | 90.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 182 | 31.21 | radiation | 20.0 | 270 | < th | dose independent | sin | 15 | NA |
| 200 | 31.23 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 20 |
| 222 | 31.26 | radiation | 30.0 | 270 | > th | dose independent | sin | 13 | NA |
| 373 | 31.40 | humidity | 70.0 | 90 | > th | dose independent | rect. | 17 | 8 |
| 382 | 31.41 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 407 | 31.48 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 14 | 16 |
| 408 | 31.48 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 427 | 31.50 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 13 | 7 |
| 437 | 31.52 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 17 | 8 |
| 460 | 31.54 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 18 |
| 467 | 31.56 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 472 | 31.57 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 481 | 31.57 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 15 |
| 483 | 31.58 | temperature | 30.0 | 270 | > th | dose independent | rect. | 13 | 1 |
| 485 | 31.58 | humidity | 50.0 | 90 | > th | dose independent | rect. | 17 | 8 |
| 486 | 31.58 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 9 |
| 504 | 31.59 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 507 | 31.59 | radiation | 1.0 | 90 | < th | dose independent | rect. | 8 | 17 |
| 508 | 31.59 | temperature | 30.0 | 30 | < th | dose independent | rect. | 6 | 19 |
| 510 | 31.59 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 523 | 31.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 9 |
| 529 | 31.60 | radiation | 1.0 | 30 | < th | dose independent | rect. | 11 | 14 |
| 539 | 31.60 | temperature | 25.0 | 270 | > th | dose dependent | sin | 0 | NA |
| 542 | 31.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 9 |
| 563 | 31.62 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 22 | 8 |
| 587 | 31.64 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 11 | 14 |
| 634 | 31.66 | temperature | 25.0 | 90 | > th | dose independent | rect. | 13 | 7 |
| 693 | 31.70 | humidity | 90.0 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 705 | 31.71 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 6 | 19 |
| 717 | 31.73 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 12 | 16 |
| 724 | 31.73 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 17 | 8 |
| 731 | 31.73 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 738 | 31.74 | wind | 9.0 | 90 | < th | dose independent | rect. | 17 | 8 |
| 739 | 31.74 | temperature | 15.0 | 90 | > th | dose independent | rect. | 17 | 8 |
| 776 | 31.76 | temperature | 10.0 | 90 | > th | dose independent | rect. | 1 | 16 |
| 777 | 31.76 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 812 | 31.78 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 814 | 31.78 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 9 |
| 817 | 31.78 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 18 |
| 830 | 31.78 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 18 |
| 834 | 31.79 | wind | 9.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 835 | 31.79 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 858 | 31.81 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 11 | 6 |
| 860 | 31.81 | temperature | 30.0 | 30 | < th | dose independent | rect. | 6 | 8 |
| 861 | 31.81 | temperature | 30.0 | 90 | < th | dose independent | rect. | 17 | 8 |
| 867 | 31.81 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 11 | 6 |
| 872 | 31.81 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 16 |
| 888 | 31.83 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 9 |
| 889 | 31.83 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 9 |
| 890 | 31.83 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 15 |
| 903 | 31.84 | wind | 9.0 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 906 | 31.84 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 18 |
| 946 | 31.86 | humidity | 70.0 | 270 | > th | dose independent | rect. | 6 | 16 |
| 971 | 31.87 | wind | 9.0 | 270 | < th | dose independent | rect. | 12 | 16 |