BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0470700 Os07g0470700|AK120675
(402 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G51110.1 | chr1:18935380-18937484 FORWARD LENGTH=410 376 e-104
AT3G26070.1 | chr3:9526904-9528199 FORWARD LENGTH=243 51 1e-06
>AT1G51110.1 | chr1:18935380-18937484 FORWARD LENGTH=410
Length = 409
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 188/331 (56%), Positives = 241/331 (72%), Gaps = 4/331 (1%)
Query: 70 LLDALAGVQGRGRGVAPRQLEEVESAVQALEALGGLPDPTNSSLIEGSWQLIFTTRPGSA 129
L+DAL G+QGRG+ +P+QL +VESAV+ LE L G+ +PT+S LIEG W+L+FTTRPG+A
Sbjct: 78 LIDALIGIQGRGKSASPKQLNDVESAVKVLEGLEGIQNPTDSDLIEGRWRLMFTTRPGTA 137
Query: 130 SPIQRTFVGVDSFKIFQEVYLR-TDDPRVINVVKFSESIGELKVEAEATIEDGKRILFRF 188
SPIQRTF GVD F +FQ+VYL+ T+DPRV N+VKFS+ IGELKVEA A+I+DGKR+LFRF
Sbjct: 138 SPIQRTFTGVDVFTVFQDVYLKATNDPRVSNIVKFSDFIGELKVEAVASIKDGKRVLFRF 197
Query: 189 DRAAFNFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSQTGNIRISRGNKGTTFVLQKSAD 248
DRAAF+ KFLPFKVPYPVPF+LLGDEAKGWLDTTYLS +GN+RISRGNKGTTFVLQK
Sbjct: 198 DRAAFDLKFLPFKVPYPVPFRLLGDEAKGWLDTTYLSPSGNLRISRGNKGTTFVLQKETV 257
Query: 249 QRQLLLSAISAGTGVKEAIDD-LTSSRQGIEADLNTLAGEWQLLWSSKTEDESWSFVASA 307
RQ LL+ IS GV EAID+ L S+ E + L G WQ++WSS+ +SW A+
Sbjct: 258 PRQKLLATISQDKGVAEAIDEFLASNSNSAEDNYELLEGSWQMIWSSQMYTDSWIENAAN 317
Query: 308 GLKGVQIIKEDGQLKNLVRPFPGVSLNASGNICKNEDGNNFNLSINKGAIQAGGLQFPLD 367
GL G QII++DG++K V P + G K+E + ++L ++ AI G +P+D
Sbjct: 318 GLMGRQIIEKDGRIKFEVNIIPAFRFSMKGKFIKSE-SSTYDLKMDDAAIIGGAFGYPVD 376
Query: 368 ARGEFAMEILYIDNKIRISN-INQHKLVHVR 397
++ILY D K+RIS + VH+R
Sbjct: 377 ITNNIELKILYTDEKMRISRGFDNIIFVHIR 407
>AT3G26070.1 | chr3:9526904-9528199 FORWARD LENGTH=243
Length = 242
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 86/177 (48%), Gaps = 24/177 (13%)
Query: 70 LLDALAGVQGRGRGVAPRQLEEVESAVQALEALGGLPDPTNSSLIEGSWQLIFTTRPGSA 129
LL+A+ ++ RG +P ++ + +EA+ +P S L+ G W+LI+TT SA
Sbjct: 78 LLEAIEPLE-RGATASPDDQLRIDQLARKVEAVNPTKEPLKSDLVNGKWELIYTT---SA 133
Query: 130 SPIQ-RTFVGVDSFKIFQEVYLRTDDPRVINVVKFSESI-GELKVEAEATIEDGKRILFR 187
S +Q + + S +Q + + T + + F S+ G++K + K++ +
Sbjct: 134 SILQAKKPRFLRSITNYQSINVDTLKVQNMETWPFYNSVTGDIKP------LNSKKVAVK 187
Query: 188 FDRAAFNFKFLPFKVPYPVPFKLLGDEAKGWLDTTYLSQTGNIRISRGNKGTTFVLQ 244
F+P K P D A+G L+ TY+ + +R+SRG+KG F+L+
Sbjct: 188 LQVFKI-LGFIPIKAP---------DSARGELEITYVDE--ELRLSRGDKGNLFILK 232
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.135 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,495,260
Number of extensions: 302214
Number of successful extensions: 708
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 707
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 301
Effective length of database: 8,337,553
Effective search space: 2509603453
Effective search space used: 2509603453
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)