Os07g0466300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rurm1 protein.
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Os07g0466300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rurm1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.59 | 0.247 | 12.2 | -0.722 | 0.309 | -0.617 | 0.119 | 0.605 | -0.155 | 8.45 | 25.03 | 986 | -- | -- |
| 28 | 0.246 | 12.1 | -0.61 | 0.302 | -0.644 | 0.24 | -- | -0.121 | 8.53 | 24.5 | 1048 | -- | -- |
| 27.63 | 0.245 | 12.2 | -0.722 | 0.306 | -0.615 | -- | 0.643 | -0.156 | 8.45 | 24.93 | 1010 | -- | -- |
| 28.12 | 0.247 | 12.1 | -0.613 | 0.298 | -0.68 | -- | -- | -0.122 | 8.43 | 24.39 | 1037 | -- | -- |
| 31.87 | 0.263 | 12.2 | -0.752 | -- | -0.608 | -- | 0.742 | -0.165 | -- | 25.61 | 1343 | -- | -- |
| 34.66 | 0.276 | 12.1 | -0.419 | 0.267 | -- | 0.215 | -- | 0.00904 | 7.64 | -- | -- | -- | -- |
| 34.79 | 0.276 | 12.1 | -0.414 | 0.268 | -- | -- | -- | 0.00858 | 7.54 | -- | -- | -- | -- |
| 32.29 | 0.265 | 12.2 | -0.618 | -- | -0.691 | -- | -- | -0.129 | -- | 24.68 | 1368 | -- | -- |
| 36.69 | 0.282 | 12.1 | -- | 0.295 | -0.396 | -- | -- | -0.0153 | 8.15 | 24.4 | 904 | -- | -- |
| 38.63 | 0.29 | 12.1 | -0.41 | -- | -- | -- | -- | 0.0127 | -- | -- | -- | -- | -- |
| 39.31 | 0.293 | 12.1 | -- | 0.265 | -- | -- | -- | 0.0547 | 7.65 | -- | -- | -- | -- |
| 40.82 | 0.298 | 12.1 | -- | -- | -0.373 | -- | -- | -0.00901 | -- | 24.91 | 1313 | -- | -- |
| 43.08 | 0.306 | 12.1 | -- | -- | -- | -- | -- | 0.0583 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 2 | 26.06 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 3 | 26.43 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 6 | 26.59 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 7 |
| 8 | 26.69 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 11 | 26.75 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 14 | 26.79 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 21 | 26.90 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 22 | 26.91 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 26 | 26.92 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 32 | 26.96 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 42 | 27.00 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 73 | 27.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 86 | 27.13 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 134 | 27.21 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 135 | 27.21 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 138 | 27.22 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 24 | 14 |
| 139 | 27.22 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 177 | 27.25 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 22 |
| 178 | 27.26 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 202 | 27.28 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 227 | 27.30 | atmosphere | 1005.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 244 | 27.31 | atmosphere | 1005.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 305 | 27.33 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 394 | 27.39 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 467 | 27.42 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 479 | 27.43 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 19 | 10 |
| 481 | 27.43 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 485 | 27.44 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 502 | 27.44 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 14 | NA |
| 504 | 27.44 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 505 | 27.44 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 506 | 27.44 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 510 | 27.45 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 524 | 27.45 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 20 | 8 |
| 532 | 27.46 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 555 | 27.47 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 561 | 27.48 | atmosphere | 1005.0 | 43200 | < th | dose independent | no | NA | NA |
| 565 | 27.48 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 570 | 27.48 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 7 | 22 |
| 597 | 27.49 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 605 | 27.49 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 639 | 27.50 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 647 | 27.51 | atmosphere | 1005.0 | 43200 | > th | dose independent | no | NA | NA |
| 649 | 27.51 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 677 | 27.51 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 24 | 23 |
| 678 | 27.51 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 698 | 27.52 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 710 | 27.53 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 716 | 27.53 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 717 | 27.53 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 10 | 11 |
| 738 | 27.53 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 745 | 27.54 | wind | 9.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 748 | 27.54 | wind | 9.0 | 14400 | > th | dose independent | rect. | 3 | 10 |
| 767 | 27.54 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 790 | 27.55 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 793 | 27.55 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 7 |
| 820 | 27.56 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 17 | 11 |
| 853 | 27.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 856 | 27.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 6 |
| 857 | 27.58 | wind | 9.0 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 884 | 27.59 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 7 |
| 910 | 27.60 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 915 | 27.60 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 938 | 27.60 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 945 | 27.61 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 964 | 27.61 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 975 | 27.62 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 13 | 1 |