BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0466300 Os07g0466300|AK103374
         (100 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61113.1  | chr3:22614582-22615415 REVERSE LENGTH=100          120   1e-28
AT2G45695.1  | chr2:18826043-18826744 FORWARD LENGTH=102          118   6e-28

>AT3G61113.1 | chr3:22614582-22615415 REVERSE LENGTH=100
          Length = 99

 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 69/83 (83%)

Query: 18  STKVHKVDLQPNDGDGKVVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDWEL 77
           S K+HKV++   +    + MK LL+WV++NLIKERPEMF+KGD+VRPGVLVL+NDCDWEL
Sbjct: 17  SVKIHKVNINLLNDSDILTMKDLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDWEL 76

Query: 78  CGGLDAELEEKDVVVFISTLHGG 100
            G LD  LE+KDV+VFISTLHGG
Sbjct: 77  SGQLDTTLEDKDVIVFISTLHGG 99



>AT2G45695.1 | chr2:18826043-18826744 FORWARD LENGTH=102
          Length = 101

 Score =  118 bits (295), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 70/85 (82%), Gaps = 2/85 (2%)

Query: 18  STKVHKVDLQ-PNDGDGK-VVMKGLLAWVKSNLIKERPEMFLKGDSVRPGVLVLINDCDW 75
           S K+HKV++  PN  D     MK LL+WV++NLIKERPEMF+KGD+VRPGVLVL+NDCDW
Sbjct: 17  SEKIHKVNVDLPNGADSDDFTMKHLLSWVRTNLIKERPEMFMKGDTVRPGVLVLVNDCDW 76

Query: 76  ELCGGLDAELEEKDVVVFISTLHGG 100
           EL G LD  +E+KDVVVFISTLHGG
Sbjct: 77  ELSGQLDTVIEDKDVVVFISTLHGG 101



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,064,510
Number of extensions: 74079
Number of successful extensions: 130
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 2
Length of query: 100
Length of database: 11,106,569
Length adjustment: 70
Effective length of query: 30
Effective length of database: 9,187,449
Effective search space: 275623470
Effective search space used: 275623470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)