Os07g0452400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF82 family protein.
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Os07g0452400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF82 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.9 | 0.175 | 9.77 | -0.389 | 0.104 | 0.409 | 0.304 | -0.251 | -0.102 | 10.2 | 19.5 | 1356 | -- | -- |
| 13.99 | 0.174 | 9.77 | -0.421 | 0.101 | 0.458 | 0.245 | -- | -0.113 | 10.4 | 19.4 | 1331 | -- | -- |
| 13.89 | 0.174 | 9.77 | -0.395 | 0.133 | 0.462 | -- | -0.191 | -0.0958 | 12.5 | 18.9 | 1736 | -- | -- |
| 13.95 | 0.174 | 9.77 | -0.396 | 0.13 | 0.514 | -- | -- | -0.0994 | 12.5 | 18.99 | 1677 | -- | -- |
| 14.96 | 0.18 | 9.77 | -0.381 | -- | 0.474 | -- | -0.0841 | -0.102 | -- | 18.9 | 1964 | -- | -- |
| 17.3 | 0.195 | 9.79 | -0.588 | 0.126 | -- | 0.198 | -- | -0.187 | 11.3 | -- | -- | -- | -- |
| 17.35 | 0.195 | 9.79 | -0.579 | 0.132 | -- | -- | -- | -0.185 | 12.7 | -- | -- | -- | -- |
| 14.88 | 0.18 | 9.77 | -0.409 | -- | 0.466 | -- | -- | -0.107 | -- | 19.3 | 1200 | -- | -- |
| 14.85 | 0.179 | 9.76 | -- | 0.129 | 0.629 | -- | -- | -0.024 | 13.2 | 17.7 | 40935 | -- | -- |
| 18.45 | 0.201 | 9.79 | -0.583 | -- | -- | -- | -- | -0.187 | -- | -- | -- | -- | -- |
| 26.18 | 0.239 | 9.78 | -- | 0.141 | -- | -- | -- | -0.12 | 12.9 | -- | -- | -- | -- |
| 15.64 | 0.184 | 9.75 | -- | -- | 0.599 | -- | -- | -0.0121 | -- | 17.2 | 41559 | -- | -- |
| 27.43 | 0.244 | 9.78 | -- | -- | -- | -- | -- | -0.123 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.36 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 21 |
| 20 | 13.67 | temperature | 20 | 720 | > th | dose independent | rect. | 6 | 14 |
| 25 | 13.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 19 |
| 26 | 13.70 | temperature | 20 | 720 | > th | dose independent | rect. | 15 | 17 |
| 50 | 13.79 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 15 |
| 65 | 13.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 71 | 13.84 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 78 | 13.85 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 19 |
| 79 | 13.86 | temperature | 20 | 720 | > th | dose independent | sin | 13 | NA |
| 92 | 13.88 | temperature | 20 | 720 | > th | dose independent | sin | 23 | NA |
| 131 | 13.94 | temperature | 15 | 720 | > th | dose dependent | sin | 12 | NA |
| 133 | 13.95 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 4 |
| 143 | 13.96 | temperature | 20 | 720 | > th | dose independent | sin | 17 | NA |
| 158 | 13.98 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 8 |
| 177 | 13.99 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 195 | 14.02 | wind | 9 | 43200 | < th | dose independent | rect. | 24 | 6 |
| 209 | 14.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 8 |
| 229 | 14.05 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 8 |
| 247 | 14.06 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 13 |
| 261 | 14.07 | temperature | 20 | 1440 | < th | dose independent | sin | 16 | NA |
| 292 | 14.08 | temperature | 15 | 720 | > th | dose dependent | sin | 16 | NA |
| 294 | 14.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 11 |
| 306 | 14.09 | wind | 9 | 43200 | < th | dose independent | rect. | 3 | 3 |
| 317 | 14.09 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 410 | 14.12 | temperature | 20 | 1440 | < th | dose dependent | rect. | 19 | 9 |
| 444 | 14.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 20 |
| 451 | 14.13 | temperature | 20 | 1440 | < th | dose dependent | rect. | 22 | 5 |
| 471 | 14.14 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 2 |
| 497 | 14.14 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 548 | 14.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 569 | 14.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 20 |
| 570 | 14.15 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 20 |
| 572 | 14.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 21 |
| 574 | 14.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 10 | 22 |
| 582 | 14.16 | radiation | 20 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 646 | 14.17 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 657 | 14.17 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 785 | 14.19 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 786 | 14.19 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 2 |
| 820 | 14.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 23 |
| 827 | 14.19 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 901 | 14.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 5 |
| 928 | 14.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 2 |
| 961 | 14.21 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 962 | 14.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 1 |