BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0452400 Os07g0452400|Os07g0452400
         (501 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24340.1  | chr5:8297328-8300156 FORWARD LENGTH=506            459   e-129
AT1G56310.1  | chr1:21082863-21085564 FORWARD LENGTH=590           59   5e-09
AT2G32415.1  | chr2:13761307-13765421 REVERSE LENGTH=892           53   5e-07

>AT5G24340.1 | chr5:8297328-8300156 FORWARD LENGTH=506
          Length = 505

 Score =  459 bits (1180), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 249/522 (47%), Positives = 326/522 (62%), Gaps = 55/522 (10%)

Query: 14  LAVHLVTGGGSSPEHXXXXXXXXXXXXXXXDAEWKPRRRGXXXXXXXXXXXXXXXXXLQF 73
           L ++LV+   SS E                DAEWKP+                      F
Sbjct: 5   LKIYLVSSTDSS-EFTHLKWSFTRSTIIALDAEWKPQHSNTS----------------SF 47

Query: 74  PTVTLLQVACRXXXXXXXXXXXEVFVVDLLAVXXXXXXXXXXXXXXXXXXXKLGFRFKQD 133
           PTVTLLQVACR           +VF++DL ++                   KLGFRFKQD
Sbjct: 48  PTVTLLQVACRLSHATDVS---DVFLIDLSSIHLPSVWELLNDMFVSPDVLKLGFRFKQD 104

Query: 134 LVYLSATFAAALGSSAGFERVEPFLDVTNAYYYLKGHDMQKRLPRETKSLATICEELLGV 193
           LVYLS+TF    G   GF+ V+ +LD+T+ Y YL+     ++ P++ KSLA IC+E+L +
Sbjct: 105 LVYLSSTFTQH-GCEGGFQEVKQYLDITSIYNYLQHKRFGRKAPKDIKSLAAICKEMLDI 163

Query: 194 YLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFH-------------------QK 234
            LSKELQCSDWSYRPL+E Q  YAA+DA+ LL IFD+F                    Q+
Sbjct: 164 SLSKELQCSDWSYRPLTEEQKLYAATDAHCLLQIFDVFEAHLVEGITVQDLRVINVGLQE 223

Query: 235 IRTEGK----------CLPTNELTSDGHCPQRDAEC----SSSEDAVCFDDYFTSVVMKY 280
           I TE            C  T+ + S     Q  A       ++ + +  D+    +V K+
Sbjct: 224 ILTESDYSSKIVTVKLCKATDVIRSMSENGQNIANGVVPRKTTLNTMPMDENLLKIVRKF 283

Query: 281 AEKILLTESDTKPRSSRRKEKQKLATNA-KCKEKFEGSTEWQGLPPWDPSAGGDGCPKFL 339
            E+ILL ESD  P+  ++K ++++A++     ++   S +WQG PPWD S GGDGCPKFL
Sbjct: 284 GERILLKESDLLPKKLKKKTRRRVASSTMNTNKQLVCSADWQGPPPWDSSLGGDGCPKFL 343

Query: 340 CDVMIEGLAKHLRCVGIDAATPSSRKPEPRELLNQTYKERRVLLTRDVKLLKYQYLTSNQ 399
            DVM+EGLAKHLRCVGIDAA P S+KP+ RELL+Q +KE RVLLTRD KLL++Q L  +Q
Sbjct: 344 LDVMVEGLAKHLRCVGIDAAIPHSKKPDSRELLDQAFKENRVLLTRDTKLLRHQDLAKHQ 403

Query: 400 VYRVKSLLKHDQLAEVIDTFQLKISEDKLMSRCTKCNGRFIQKPLTLDEAIEASKGFQII 459
           +YRVKSLLK++QL EVI+TFQLKIS ++LMSRCTKCNG+FIQKPL+++EAIEA+KGFQ I
Sbjct: 404 IYRVKSLLKNEQLLEVIETFQLKISGNQLMSRCTKCNGKFIQKPLSIEEAIEAAKGFQRI 463

Query: 460 PSCLFKRNLEFWKCTDCNQLYWEGTQYHNAVQKFLSVCNISD 501
           P+CLF +NLEFW+C +C+QLYWEGTQYHNAVQKF+ VC +S+
Sbjct: 464 PNCLFNKNLEFWQCMNCHQLYWEGTQYHNAVQKFMEVCKLSE 505



>AT1G56310.1 | chr1:21082863-21085564 FORWARD LENGTH=590
          Length = 589

 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 16/104 (15%)

Query: 125 KLGFRFKQDLVYLSATFAAALGSSAGFERVEPFLDVTNAYYYLKGHDMQKRLPRETKSLA 184
           KLG+ F+ D+  L+ ++    G    FER +  LD+ N +    G             LA
Sbjct: 442 KLGYNFQCDIKQLALSY----GDLKCFERYDMLLDIQNVFNEPFG------------GLA 485

Query: 185 TICEELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIF 228
            + +++LGV L+K  + SDW  RPLS+ Q++YAA DA  L+ IF
Sbjct: 486 GLTKKILGVSLNKTRRNSDWEQRPLSQNQLEYAALDAAVLIHIF 529



>AT2G32415.1 | chr2:13761307-13765421 REVERSE LENGTH=892
          Length = 891

 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 4/75 (5%)

Query: 176 LPRETKSLATICEELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIFDLFHQKI 235
           L +  +SLA + E + GV  +K LQ  DW  RPLSE  ++YA +DA+YLL I D     +
Sbjct: 227 LSKPQRSLAYLLETVCGVATNKLLQREDWRQRPLSEEMVRYARTDAHYLLYIAD----SL 282

Query: 236 RTEGKCLPTNELTSD 250
            TE K L T+  + D
Sbjct: 283 TTELKQLATDSSSPD 297



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,509,363
Number of extensions: 379952
Number of successful extensions: 1046
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1043
Number of HSP's successfully gapped: 4
Length of query: 501
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 398
Effective length of database: 8,282,721
Effective search space: 3296522958
Effective search space used: 3296522958
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)