Os07g0447000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF594 family protein.
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Os07g0447000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF594 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.24 | 0.62 | 5.81 | 5.28 | 0.712 | -1.53 | 0.284 | 4.26 | 1.6 | 23.7 | 25.33 | 309 | -- | -- |
| 179.98 | 0.625 | 5.88 | 4.85 | 0.752 | -1.15 | 0.0795 | -- | 1.49 | 23.9 | 25.1 | 293 | -- | -- |
| 174.54 | 0.615 | 5.81 | 5.25 | 0.709 | -1.54 | -- | 4.49 | 1.58 | 23.8 | 25.69 | 309 | -- | -- |
| 179.66 | 0.624 | 5.88 | 4.76 | 0.766 | -1.07 | -- | -- | 1.47 | 0.176 | 25.1 | 300 | -- | -- |
| 199.43 | 0.658 | 5.78 | 5.33 | -- | -1.96 | -- | 5.3 | 1.64 | -- | 25.8 | 149 | -- | -- |
| 199.64 | 0.662 | 5.88 | 4.56 | 0.985 | -- | -0.0042 | -- | 1.39 | 2.1 | -- | -- | -- | -- |
| 199.64 | 0.662 | 5.88 | 4.56 | 0.985 | -- | -- | -- | 1.39 | 2.1 | -- | -- | -- | -- |
| 202.4 | 0.663 | 5.85 | 4.81 | -- | -1.48 | -- | -- | 1.51 | -- | 25 | 97 | -- | -- |
| 415.48 | 0.949 | 6.22 | -- | 1.04 | 2.89 | -- | -- | 0.0761 | 2.15 | 12.15 | 47520 | -- | -- |
| 257.71 | 0.75 | 5.87 | 4.6 | -- | -- | -- | -- | 1.42 | -- | -- | -- | -- | -- |
| 747.39 | 1.28 | 5.99 | -- | 1.07 | -- | -- | -- | 0.885 | 2.2 | -- | -- | -- | -- |
| 467.1 | 1.01 | 6.19 | -- | -- | 2.97 | -- | -- | -0.00189 | -- | 12.9 | 47520 | -- | -- |
| 815.85 | 1.33 | 5.99 | -- | -- | -- | -- | -- | 0.906 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.85 | humidity | 80 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 2 | 169.17 | humidity | 70 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 4 | 169.47 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 15 |
| 5 | 169.60 | humidity | 80 | 43200 | < th | dose independent | rect. | 7 | 14 |
| 6 | 169.66 | humidity | 70 | 43200 | > th | dose dependent | rect. | 7 | 14 |
| 14 | 169.88 | humidity | 70 | 43200 | > th | dose dependent | rect. | 15 | 5 |
| 28 | 170.41 | humidity | 80 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 31 | 170.50 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 33 | 170.55 | humidity | 80 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 39 | 170.70 | humidity | 80 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 42 | 170.73 | humidity | 80 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 62 | 171.05 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 9 |
| 66 | 171.09 | humidity | 70 | 43200 | > th | dose dependent | sin | 22 | NA |
| 97 | 171.50 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 111 | 171.72 | humidity | 70 | 43200 | > th | dose dependent | rect. | 6 | 8 |
| 118 | 171.78 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 11 |
| 126 | 171.89 | humidity | 80 | 43200 | < th | dose independent | sin | 21 | NA |
| 144 | 172.03 | humidity | 80 | 43200 | > th | dose independent | sin | 21 | NA |
| 163 | 172.13 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 6 |
| 167 | 172.16 | humidity | 70 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 170 | 172.18 | wind | 3 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 187 | 172.30 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 188 | 172.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 205 | 172.38 | radiation | 1 | 43200 | < th | dose independent | rect. | 1 | 5 |
| 207 | 172.39 | humidity | 60 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 212 | 172.41 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 217 | 172.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 23 | 7 |
| 218 | 172.42 | radiation | 1 | 43200 | < th | dose independent | rect. | 21 | 9 |
| 221 | 172.43 | radiation | 1 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 243 | 172.55 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 259 | 172.63 | humidity | 70 | 43200 | > th | dose dependent | rect. | 9 | 2 |
| 268 | 172.67 | radiation | 30 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 274 | 172.71 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 276 | 172.71 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 10 |
| 336 | 173.02 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 366 | 173.14 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 5 |
| 377 | 173.20 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 399 | 173.32 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 424 | 173.40 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 461 | 173.53 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 462 | 173.54 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 466 | 173.54 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 473 | 173.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 8 |
| 475 | 173.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 13 |
| 476 | 173.56 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 483 | 173.57 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 10 |
| 498 | 173.62 | humidity | 80 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 504 | 173.63 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 520 | 173.68 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 610 | 173.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 611 | 173.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 612 | 173.93 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 657 | 174.02 | temperature | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 755 | 174.15 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 9 |
| 775 | 174.20 | temperature | 30 | 43200 | < th | dose independent | rect. | 4 | 6 |
| 803 | 174.22 | temperature | 30 | 43200 | < th | dose independent | rect. | 21 | 13 |
| 810 | 174.23 | temperature | 30 | 43200 | < th | dose independent | rect. | 23 | 11 |
| 812 | 174.23 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 815 | 174.24 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 821 | 174.25 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 887 | 174.41 | humidity | 90 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 889 | 174.42 | humidity | 70 | 1440 | > th | dose independent | sin | 15 | NA |
| 914 | 174.45 | humidity | 90 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 931 | 174.47 | radiation | 30 | 4320 | < th | dose independent | sin | 11 | NA |
| 936 | 174.48 | temperature | 30 | 14400 | > th | dose independent | sin | 12 | NA |
| 937 | 174.48 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 973 | 174.51 | temperature | 30 | 14400 | < th | dose independent | sin | 12 | NA |
| 987 | 174.53 | radiation | 30 | 1440 | > th | dose dependent | rect. | 15 | 19 |