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Os07g0446100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0108) R2 : 0.63
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.73 (0.0274) R2dC : 0.579 R2C : 0.575
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.165 (0.0228) R2dN8 : 0.0552 R2N8 : 0.0508
σ : 0.204
deviance : 19.02
__
_____
C
peak time of C : 3.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.99 0.176 11.6 0.399 0.57 -0.419 0.359 0.211 0.278 3.67 20.3 66 -- --
13.94 0.174 11.6 0.35 0.57 -0.394 0.295 -- 0.265 3.64 21.93 67 -- --
14.17 0.177 11.7 0.326 0.57 -0.418 -- -0.17 0.257 3.9 21.77 67 -- --
14.18 0.175 11.6 0.359 0.56 -0.425 -- -- 0.265 3.74 21.97 65 -- --
25.1 0.233 11.6 0.501 -- -0.893 -- 0.337 0.333 -- 23.65 88 -- --
16.61 0.191 11.7 0.274 0.722 -- 0.418 -- 0.197 3.54 -- -- -- --
17.14 0.194 11.7 0.267 0.725 -- -- -- 0.195 3.6 -- -- -- --
25.18 0.234 11.6 0.452 -- -0.896 -- -- 0.328 -- 23.58 78 -- --
17.28 0.195 11.7 -- 0.612 -0.32 -- -- 0.208 3.79 22.45 69 -- --
46.41 0.318 11.7 0.298 -- -- -- -- 0.214 -- -- -- -- --
19.02 0.204 11.7 -- 0.73 -- -- -- 0.165 3.6 -- -- -- --
30.21 0.256 11.7 -- -- -0.828 -- -- 0.243 -- 24.41 122 -- --
48.75 0.326 11.7 -- -- -- -- -- 0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.36 temperature 10.0 90 > th dose dependent sin 21 NA
2 13.41 temperature 20.0 10 > th dose dependent rect. 5 17
5 13.44 temperature 30.0 90 < th dose dependent sin 22 NA
6 13.44 temperature 20.0 90 > th dose dependent rect. 8 14
22 13.53 radiation 10.0 1440 < th dose dependent rect. 17 14
46 13.63 temperature 10.0 720 > th dose dependent rect. 5 8
47 13.63 temperature 30.0 90 < th dose dependent rect. 7 12
49 13.63 radiation 40.0 1440 < th dose dependent rect. 17 14
63 13.67 radiation 1.0 1440 > th dose dependent rect. 17 1
65 13.67 temperature 15.0 720 > th dose dependent rect. 5 12
66 13.67 radiation 40.0 1440 < th dose dependent rect. 17 12
67 13.68 temperature 10.0 720 > th dose dependent sin 2 NA
69 13.68 radiation 40.0 1440 < th dose dependent rect. 17 8
73 13.68 temperature 15.0 270 > th dose dependent rect. 6 14
78 13.69 radiation 20.0 1440 < th dose dependent rect. 17 1
86 13.69 radiation 1.0 1440 > th dose dependent rect. 17 14
104 13.71 radiation 20.0 1440 < th dose dependent rect. 17 6
114 13.71 humidity 50.0 14400 < th dose dependent rect. 16 19
117 13.72 humidity 50.0 14400 < th dose dependent rect. 16 1
155 13.74 humidity 50.0 14400 > th dose independent rect. 17 16
168 13.74 temperature 20.0 90 > th dose dependent rect. 8 23
175 13.75 humidity 60.0 14400 < th dose dependent rect. 16 4
242 13.78 temperature 10.0 720 > th dose dependent rect. 8 9
266 13.81 humidity 50.0 14400 > th dose independent rect. 16 18
279 13.81 temperature 20.0 10 > th dose dependent rect. 5 21
280 13.82 precipitation 0.1 43200 > th dose independent rect. 16 2
281 13.82 precipitation 0.1 43200 < th dose independent rect. 16 2
283 13.82 precipitation 0.1 43200 < th dose dependent rect. 16 2
292 13.83 radiation 1.0 1440 < th dose independent rect. 17 15
309 13.84 humidity 80.0 14400 < th dose independent rect. 19 1
311 13.84 humidity 50.0 14400 < th dose independent rect. 17 17
349 13.85 temperature 20.0 10 > th dose dependent rect. 16 23
365 13.86 temperature 20.0 10 > th dose dependent rect. 24 23
369 13.87 temperature 30.0 90 < th dose dependent rect. 9 10
401 13.88 temperature 20.0 90 > th dose dependent rect. 24 23
422 13.90 precipitation 0.1 43200 > th dose dependent rect. 16 4
436 13.91 radiation 1.0 1440 > th dose independent rect. 17 15
438 13.91 humidity 50.0 14400 < th dose independent rect. 16 19
471 13.92 radiation 10.0 1440 < th dose dependent sin 12 NA
490 13.93 humidity 80.0 14400 > th dose independent rect. 19 1
507 13.94 radiation 10.0 1440 > th dose independent rect. 17 1
534 13.95 humidity 50.0 14400 < th dose independent rect. 16 1
535 13.95 humidity 50.0 14400 > th dose independent rect. 17 8
562 13.96 humidity 60.0 14400 < th dose independent rect. 17 3
564 13.96 humidity 50.0 14400 > th dose independent rect. 16 5
609 13.97 humidity 50.0 14400 > th dose independent rect. 16 3
642 13.97 temperature 30.0 720 < th dose dependent rect. 3 11
655 13.97 radiation 10.0 1440 < th dose dependent rect. 16 20
662 13.98 temperature 30.0 720 < th dose dependent rect. 7 6
683 13.99 radiation 1.0 1440 < th dose independent rect. 17 20
702 14.00 radiation 10.0 1440 < th dose independent rect. 17 12
718 14.00 temperature 30.0 90 < th dose dependent rect. 7 16
730 14.01 radiation 10.0 1440 < th dose independent rect. 17 8
762 14.02 temperature 30.0 720 < th dose dependent sin 3 NA
776 14.03 radiation 10.0 1440 < th dose independent sin 12 NA
780 14.03 radiation 10.0 1440 < th dose independent rect. 17 4
781 14.03 radiation 10.0 1440 < th dose independent rect. 17 6
816 14.04 radiation 10.0 1440 < th dose independent rect. 17 1
836 14.04 temperature 20.0 10 > th dose dependent no NA NA
890 14.05 radiation 1.0 1440 > th dose independent rect. 17 20
961 14.07 radiation 10.0 1440 < th dose dependent rect. 24 7
986 14.07 temperature 25.0 90 > th dose dependent rect. 16 21
996 14.08 radiation 20.0 14400 < th dose independent rect. 16 15