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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os07g0446000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PAK-box/P21-Rho-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.92 (0.0398) R2 : 0.273
β1 : -0.794 (0.147) R2dD : 0.0501 R2D : 0.0607
β2 : 0.672 (0.0968) R2dC : 0.0773 R2C : 0.0825
β3 : 1.42 (0.181) R2dE : 0.11 R2E : 0.109
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.398 (0.087) R2dN8 : 0.0479 R2N8 : -0.012
σ : 0.739
deviance : 251.49
__
_____
C
peak time of C : 14.4
E
wheather : humidity
threshold : 88.28
memory length : 1525
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
245.4 0.736 3.93 -0.742 0.671 1.38 1.12 0.916 -0.395 13.9 89 1517 -- --
246.63 0.731 3.92 -0.819 0.654 1.43 1.14 -- -0.411 13.8 89 1528 -- --
250.07 0.737 3.93 -0.679 0.632 1.38 -- 1.12 -0.397 14.1 89 1586 -- --
251.49 0.739 3.92 -0.794 0.672 1.42 -- -- -0.398 14.4 88.28 1525 -- --
269.6 0.765 3.94 -0.671 -- 1.61 -- 1.07 -0.435 -- 88.92 1726 -- --
280.47 0.785 3.88 -1.05 0.708 -- 1.13 -- -0.24 14 -- -- -- --
285.12 0.791 3.88 -1.02 0.718 -- -- -- -0.233 14.3 -- -- -- --
271.17 0.767 3.93 -0.731 -- 1.7 -- -- -0.445 -- 89 1726 -- --
267.59 0.762 3.91 -- 0.666 1.59 -- -- -0.335 14.4 88.71 1540 -- --
315.7 0.83 3.89 -1.05 -- -- -- -- -0.25 -- -- -- -- --
312.29 0.827 3.86 -- 0.738 -- -- -- -0.12 14.4 -- -- -- --
286.04 0.788 3.92 -- -- 1.87 -- -- -0.393 -- 88.69 1728 -- --
344.54 0.866 3.86 -- -- -- -- -- -0.134 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 228.99 wind 7 1440 < th dose independent rect. 8 1
2 229.07 wind 7 1440 > th dose independent rect. 8 1
4 229.22 wind 7 1440 > th dose independent rect. 1 8
6 229.28 temperature 20 720 < th dose independent rect. 9 10
14 231.28 wind 7 1440 > th dose dependent rect. 8 1
16 231.62 wind 7 1440 > th dose dependent rect. 1 8
37 235.75 humidity 80 10 < th dose independent rect. 20 11
42 236.24 humidity 80 270 < th dose dependent rect. 21 9
46 236.58 temperature 20 1440 > th dose independent rect. 18 1
48 236.78 wind 7 1440 < th dose independent rect. 3 6
53 237.24 humidity 80 270 < th dose independent rect. 21 9
54 237.28 wind 7 1440 < th dose independent rect. 1 8
57 237.47 humidity 90 1440 < th dose dependent rect. 22 10
69 237.90 temperature 20 720 < th dose dependent rect. 9 11
70 237.91 temperature 20 720 > th dose independent rect. 11 8
79 238.53 humidity 80 10 < th dose dependent rect. 20 11
89 239.37 humidity 80 1440 < th dose independent rect. 22 2
92 239.53 temperature 20 720 < th dose dependent rect. 19 1
96 239.86 humidity 80 1440 > th dose independent rect. 22 10
107 240.59 humidity 80 1440 < th dose independent sin 11 NA
114 240.83 humidity 80 720 < th dose dependent rect. 21 2
119 241.11 humidity 90 1440 < th dose dependent rect. 21 7
122 241.23 humidity 80 1440 < th dose independent rect. 21 11
137 241.55 humidity 90 1440 < th dose dependent rect. 5 2
165 242.46 humidity 80 1440 > th dose independent rect. 22 4
167 242.57 humidity 80 1440 > th dose independent sin 9 NA
171 242.71 humidity 80 1440 > th dose independent rect. 22 1
174 242.77 humidity 90 1440 < th dose dependent rect. 24 4
177 242.83 humidity 80 1440 < th dose independent rect. 15 17
190 243.03 humidity 80 1440 < th dose dependent rect. 23 1
203 243.29 humidity 80 1440 < th dose independent rect. 20 8
220 243.45 humidity 90 1440 < th dose dependent rect. 3 1
226 243.69 temperature 20 720 > th dose independent rect. 13 8
228 243.71 radiation 20 4320 > th dose independent rect. 6 1
250 243.85 humidity 80 270 < th dose independent sin 11 NA
258 244.00 humidity 80 270 > th dose independent rect. 17 15
262 244.05 humidity 90 1440 < th dose independent rect. 1 17
278 244.25 humidity 80 90 > th dose independent rect. 17 18
284 244.29 humidity 70 1440 > th dose dependent rect. 21 11
326 244.74 humidity 70 1440 > th dose dependent sin 11 NA
346 244.89 humidity 80 1440 > th dose independent rect. 15 17
396 245.30 humidity 80 1440 > th dose independent rect. 22 16
410 245.45 humidity 80 1440 > th dose dependent rect. 23 19
421 245.52 humidity 80 1440 > th dose independent rect. 6 1
426 245.55 humidity 80 720 > th dose independent rect. 20 8
434 245.59 humidity 80 90 > th dose independent rect. 13 22
462 245.86 humidity 80 1440 < th dose independent rect. 21 14
475 245.96 humidity 80 90 < th dose independent rect. 10 23
509 246.16 humidity 90 1440 < th dose independent rect. 21 21
517 246.21 humidity 80 270 < th dose independent rect. 19 21
521 246.22 humidity 80 1440 < th dose independent rect. 21 17
535 246.29 humidity 80 90 < th dose independent rect. 19 23
541 246.31 humidity 80 1440 > th dose dependent rect. 13 18
589 246.56 humidity 80 1440 < th dose independent rect. 19 19
610 246.64 radiation 40 4320 > th dose dependent rect. 14 19
622 246.69 humidity 50 1440 > th dose dependent rect. 21 7
638 246.74 temperature 25 1440 < th dose dependent rect. 11 1
765 247.27 humidity 70 1440 > th dose dependent rect. 5 2
789 247.33 humidity 90 1440 < th dose dependent sin 10 NA
888 247.68 radiation 40 4320 > th dose dependent rect. 14 1
926 247.73 humidity 70 1440 > th dose dependent rect. 22 4
936 247.74 humidity 50 1440 > th dose dependent rect. 22 4
941 247.75 humidity 80 10 < th dose independent rect. 10 23
976 247.85 humidity 80 14400 < th dose independent rect. 21 1