BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0446000 Os07g0446000|AK099317
(251 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28556.1 | chr4:14114754-14115795 FORWARD LENGTH=217 78 4e-15
AT2G33460.1 | chr2:14174590-14175561 REVERSE LENGTH=225 77 1e-14
AT3G23380.1 | chr3:8373947-8374708 FORWARD LENGTH=194 73 1e-13
AT2G20430.1 | chr2:8808667-8809781 REVERSE LENGTH=213 72 2e-13
AT1G04450.1 | chr1:1209006-1209853 FORWARD LENGTH=221 70 7e-13
AT4G04900.1 | chr4:2486218-2487779 REVERSE LENGTH=157 62 3e-10
AT1G03982.1 | chr1:1022424-1023136 REVERSE LENGTH=178 59 2e-09
AT4G21745.1 | chr4:11549340-11550415 FORWARD LENGTH=157 52 2e-07
AT1G61795.1 | chr1:22819943-22820826 FORWARD LENGTH=129 47 9e-06
>AT4G28556.1 | chr4:14114754-14115795 FORWARD LENGTH=217
Length = 216
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/73 (56%), Positives = 52/73 (71%), Gaps = 10/73 (13%)
Query: 2 STKMKKGILRPFRYISNM--MDGKEAAQDMQIGFPTDVKHVAHIGWDGPSVPNNNNNTAG 59
STKMK +L+ RYIS + ++G E ++MQIG PTDVKHVAHIGWDGPS + A
Sbjct: 7 STKMK-SLLKGLRYISQVFAIEG-EKEEEMQIGNPTDVKHVAHIGWDGPS------DNAT 58
Query: 60 APSWMKDYHSAPL 72
APSWM D+ S+P+
Sbjct: 59 APSWMNDFKSSPV 71
>AT2G33460.1 | chr2:14174590-14175561 REVERSE LENGTH=225
Length = 224
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 55/94 (58%), Gaps = 11/94 (11%)
Query: 1 MSTKMKKGILRPFRYISNMMDGKEAAQDMQIGFPTDVKHVAHIGWDGPSVPNNNNNTAGA 60
M+T MK G+L+ RYI+ + D +E Q+MQIGFPTDVKHVAHIG DGP T
Sbjct: 1 MATTMK-GLLKGLRYITQIFD-EEKEQEMQIGFPTDVKHVAHIGSDGP--------TNTT 50
Query: 61 PSWMKDYHSAPLDSASFRSDRGGSAAANPWASQE 94
PSWM D+ + + S RG S NP + +
Sbjct: 51 PSWMNDFKTQEHEKGQVVS-RGNSNKYNPQGTNQ 83
>AT3G23380.1 | chr3:8373947-8374708 FORWARD LENGTH=194
Length = 193
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 17/121 (14%)
Query: 1 MSTKMKKGILRPFRYISNMMDGKEAAQDMQIGFPTDVKHVAHIGWDGPSVPNNNNNTAGA 60
M++ MK G+L+ RYI+ + + E +MQIG PTDVKHVAHIGW+GPS A
Sbjct: 1 MTSPMK-GLLKGLRYIARIFE-DEKEPEMQIGIPTDVKHVAHIGWEGPS--------ATT 50
Query: 61 PSWMKDYHSAPLDSASFRSDRGGSAAANPWASQEIVVDG---GSLGDTSFSETRSEASGS 117
PSWM D+ P D +++ G++ P +S E G S G+ S +E+ S GS
Sbjct: 51 PSWMHDF--KPTDQT--KTETKGTSNKKPGSSGEKHRKGRRKTSTGNNSPTESPSRVGGS 106
Query: 118 M 118
+
Sbjct: 107 V 107
>AT2G20430.1 | chr2:8808667-8809781 REVERSE LENGTH=213
Length = 212
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 46/70 (65%), Gaps = 7/70 (10%)
Query: 1 MSTKMKKGILRPFRYISNMMDGKEAAQDMQIGFPTDVKHVAHIGWDGPSVPNNNNNTAGA 60
MS+ K +L+ RYIS + + E +++QIG PTDVKHVAHIGWDGPS A A
Sbjct: 5 MSSSKMKSLLKGLRYISQVFES-EKEEEIQIGNPTDVKHVAHIGWDGPSA------NATA 57
Query: 61 PSWMKDYHSA 70
PSWM +++S
Sbjct: 58 PSWMTEFNSG 67
>AT1G04450.1 | chr1:1209006-1209853 FORWARD LENGTH=221
Length = 220
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 9/61 (14%)
Query: 7 KGILRPFRYISNMMDGKEAAQDMQIGFPTDVKHVAHIGWDGPSVPNNNNNTAGAPSWMKD 66
KG+L+ RYI+ + D +E +DMQIGFPTDVKHVAHIG DGP+ PSWM D
Sbjct: 5 KGLLKGLRYITQIFD-EEKDKDMQIGFPTDVKHVAHIGSDGPAT--------NVPSWMGD 55
Query: 67 Y 67
+
Sbjct: 56 F 56
>AT4G04900.1 | chr4:2486218-2487779 REVERSE LENGTH=157
Length = 156
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 9/67 (13%)
Query: 1 MSTKMKKGILRPFRYISNMMDGKEAAQDMQIGFPTDVKHVAHIGWDGPSVPNNNNNTAGA 60
MS KMK GI + F+ IS + ++ +++IGFPTDVKHVAHIGW+G ++ A
Sbjct: 1 MSMKMK-GIYKGFKCISQIFAVEKERDEIEIGFPTDVKHVAHIGWEG--------SSGSA 51
Query: 61 PSWMKDY 67
P WM ++
Sbjct: 52 PGWMSEF 58
>AT1G03982.1 | chr1:1022424-1023136 REVERSE LENGTH=178
Length = 177
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/52 (59%), Positives = 36/52 (69%), Gaps = 8/52 (15%)
Query: 16 ISNMMDGKEAAQDMQIGFPTDVKHVAHIGWDGPSVPNNNNNTAGAPSWMKDY 67
+ N + KEA +MQIG PTDVKHVAHIGWDG SV +N PSWMKD+
Sbjct: 4 LHNAENEKEA--EMQIGTPTDVKHVAHIGWDGGSVNHN------PPSWMKDF 47
>AT4G21745.1 | chr4:11549340-11550415 FORWARD LENGTH=157
Length = 156
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 46/84 (54%), Gaps = 18/84 (21%)
Query: 1 MSTKMKKGILRPFRYISNMMDGKEAAQDMQIGFPTDVKHVAHIGWDGPSVPNNNNNTAGA 60
M+ KMK GI + F+ I M GKE +D++IG PT+VKHVAHIGW ++
Sbjct: 1 MAMKMK-GIYKSFKSI--MFVGKE--RDLEIGHPTEVKHVAHIGW---------GSSGSD 46
Query: 61 PSWMKDYHSAPLDSASFRSDRGGS 84
P WM D+ + A F S R S
Sbjct: 47 PGWMSDFKAG----AEFLSPRTSS 66
>AT1G61795.1 | chr1:22819943-22820826 FORWARD LENGTH=129
Length = 128
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 44/70 (62%), Gaps = 9/70 (12%)
Query: 1 MSTKMKKGILRPFRYISNMMDGKEAAQDMQIGFPTDVKHVAHIGWDGPSVPNNNNNTAGA 60
M+T+ K + F+ S++ D +E + +IG+PTDV+HV+HIGWD +++ A
Sbjct: 1 MATRFKGLYNKSFKCFSDIFDVEEEEEM-EIGYPTDVRHVSHIGWDS--------SSSSA 51
Query: 61 PSWMKDYHSA 70
PSW+ ++ ++
Sbjct: 52 PSWLHEFKTS 61
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.127 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,321,119
Number of extensions: 122210
Number of successful extensions: 204
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 9
Length of query: 251
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 155
Effective length of database: 8,474,633
Effective search space: 1313568115
Effective search space used: 1313568115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 110 (47.0 bits)