Os07g0444000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os07g0444000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.97 | 0.244 | 11.2 | -0.599 | 0.267 | 0.436 | 0.0788 | 1.23 | 0.135 | 2.17 | 39.61 | 4571 | -- | -- |
| 27.77 | 0.245 | 11.2 | -0.494 | 0.254 | 0.38 | 0.0857 | -- | 0.161 | 2.29 | 41.16 | 4571 | -- | -- |
| 26.97 | 0.242 | 11.2 | -0.607 | 0.269 | 0.437 | -- | 1.27 | 0.136 | 2.11 | 39.91 | 4564 | -- | -- |
| 27.83 | 0.246 | 11.2 | -0.492 | 0.256 | 0.382 | -- | -- | 0.161 | 2.16 | 41.14 | 4572 | -- | -- |
| 31.13 | 0.26 | 11.2 | -0.621 | -- | 0.462 | -- | 1.16 | 0.132 | -- | 39.91 | 4604 | -- | -- |
| 31.94 | 0.265 | 11.2 | -0.475 | 0.276 | -- | 0.0776 | -- | 0.101 | 2.11 | -- | -- | -- | -- |
| 31.96 | 0.265 | 11.2 | -0.477 | 0.276 | -- | -- | -- | 0.101 | 2.05 | -- | -- | -- | -- |
| 31.49 | 0.261 | 11.2 | -0.485 | -- | 0.411 | -- | -- | 0.18 | -- | 40.22 | 4602 | -- | -- |
| 33.63 | 0.27 | 11.2 | -- | 0.245 | 0.381 | -- | -- | 0.218 | 2.16 | 40.02 | 4571 | -- | -- |
| 36.54 | 0.282 | 11.2 | -0.465 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 37.96 | 0.288 | 11.2 | -- | 0.267 | -- | -- | -- | 0.154 | 2.01 | -- | -- | -- | -- |
| 37.09 | 0.284 | 11.2 | -- | -- | 0.39 | -- | -- | 0.221 | -- | 40.05 | 4601 | -- | -- |
| 42.25 | 0.303 | 11.2 | -- | -- | -- | -- | -- | 0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.35 | temperature | 30 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 15 | 24.52 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 29 | 24.67 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 34 | 24.69 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 35 | 24.70 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 38 | 24.71 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 43 | 24.84 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 51 | 25.89 | temperature | 30 | 270 | < th | dose independent | sin | 5 | NA |
| 53 | 25.94 | temperature | 30 | 90 | > th | dose independent | rect. | 9 | 7 |
| 54 | 25.96 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 56 | 25.97 | temperature | 30 | 270 | > th | dose independent | rect. | 18 | 20 |
| 60 | 26.00 | temperature | 30 | 270 | > th | dose independent | sin | 5 | NA |
| 78 | 26.04 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 7 |
| 97 | 26.10 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 5 |
| 116 | 26.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 1 | 13 |
| 138 | 26.22 | temperature | 25 | 270 | > th | dose dependent | sin | 5 | NA |
| 142 | 26.23 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 162 | 26.26 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 170 | 26.31 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 2 |
| 209 | 26.36 | temperature | 30 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 239 | 26.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 293 | 26.40 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 309 | 26.42 | temperature | 30 | 270 | > th | dose dependent | sin | 8 | NA |
| 347 | 26.46 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 350 | 26.47 | temperature | 10 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 394 | 26.52 | radiation | 30 | 4320 | > th | dose independent | rect. | 14 | 18 |
| 439 | 26.59 | radiation | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 455 | 26.59 | temperature | 30 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 485 | 26.62 | temperature | 30 | 10 | > th | dose dependent | sin | 2 | NA |
| 524 | 26.65 | wind | 1 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 572 | 26.69 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 4 |
| 596 | 26.70 | temperature | 30 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 624 | 26.72 | wind | 1 | 14400 | < th | dose independent | rect. | 10 | 4 |
| 640 | 26.72 | radiation | 10 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 650 | 26.72 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 18 |
| 685 | 26.76 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 15 |
| 703 | 26.78 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 744 | 26.80 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 757 | 26.81 | radiation | 10 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 775 | 26.82 | radiation | 10 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 864 | 26.84 | radiation | 30 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 895 | 26.85 | wind | 1 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 943 | 26.86 | temperature | 10 | 4320 | > th | dose dependent | rect. | 13 | 1 |