BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0444000 Os07g0444000|AK070141
(87 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24180.1 | chr3:8735011-8741147 REVERSE LENGTH=951 144 1e-35
AT5G49900.1 | chr5:20297235-20302019 REVERSE LENGTH=958 96 5e-21
AT4G10060.1 | chr4:6289355-6295258 FORWARD LENGTH=923 64 2e-11
AT1G33700.1 | chr1:12208853-12213571 REVERSE LENGTH=948 61 1e-10
>AT3G24180.1 | chr3:8735011-8741147 REVERSE LENGTH=951
Length = 950
Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 64/79 (81%), Positives = 75/79 (94%)
Query: 1 MKLGLRLWSYIREEASHGRKAPIDPFTRESDKPSASQGVPLGGMGSGSISRGFRGEFKHW 60
++LG+RLWSY+REEASHGRKAPIDPFT+E+ KPSASQGVPLGGMGSGSISRGFRGEFK W
Sbjct: 65 VRLGIRLWSYVREEASHGRKAPIDPFTKENCKPSASQGVPLGGMGSGSISRGFRGEFKQW 124
Query: 61 QIIPGSCEMSPVMANQFSV 79
QI PG+C+ SP+M+NQFS+
Sbjct: 125 QITPGTCDPSPMMSNQFSI 143
>AT5G49900.1 | chr5:20297235-20302019 REVERSE LENGTH=958
Length = 957
Score = 95.5 bits (236), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 3 LGLRLWSYIREEASHGRKAPIDPFTRESDKPSASQGVPLGGMGSGSISRGFRGEFKHWQI 62
+G+RLW REEA+ GR A IDPF++ S ++S GVPLGG+G+GSI R F+GEF+ WQ+
Sbjct: 60 VGIRLWFLCREEAAKGRLAFIDPFSKHS--VTSSHGVPLGGIGAGSIGRSFKGEFQRWQL 117
Query: 63 IPGSCEMSPVMANQFS 78
P CE PV+ANQFS
Sbjct: 118 FPPKCEDEPVLANQFS 133
>AT4G10060.1 | chr4:6289355-6295258 FORWARD LENGTH=923
Length = 922
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 2/77 (2%)
Query: 3 LGLRLWSYIREEASHGRKAPIDPFTRESDKPSASQGVPLGGMGSGSISRGFRGEFKHWQI 62
LG RLW Y +EEA GR + D F + + GVPLGG+G GSI R ++GEF+ +++
Sbjct: 53 LGYRLWRYTKEEAKKGRFSMYDIFKKRHVR--GDHGVPLGGIGGGSIGRSYKGEFQQFKL 110
Query: 63 IPGSCEMSPVMANQFSV 79
P CE +P++ NQFSV
Sbjct: 111 FPKICEEAPILTNQFSV 127
>AT1G33700.1 | chr1:12208853-12213571 REVERSE LENGTH=948
Length = 947
Score = 60.8 bits (146), Expect = 1e-10, Method: Composition-based stats.
Identities = 34/76 (44%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Query: 3 LGLRLWSYIREEASHGRKAPIDPFTRESDKPSASQGVPLGGMGSGSISRGFRGEFKHWQI 62
LG RLW + ++EA+ GR + D F + + GVPLGG+GSGSI R ++GEF+ +++
Sbjct: 49 LGYRLWRHTKDEAAKGRASIFDIFRKH--HITGDHGVPLGGIGSGSIGRSYKGEFQQFKL 106
Query: 63 IPGSCEMSPVMANQFS 78
P CE +P++ NQFS
Sbjct: 107 FPKICEEAPILTNQFS 122
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.134 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,002,880
Number of extensions: 80110
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 152
Number of HSP's successfully gapped: 4
Length of query: 87
Length of database: 11,106,569
Length adjustment: 58
Effective length of query: 29
Effective length of database: 9,516,441
Effective search space: 275976789
Effective search space used: 275976789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 104 (44.7 bits)