Os07g0437800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os07g0437800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 171.89 | 0.616 | 3.58 | -4.8 | 0.0844 | 41.2 | 0.219 | -240 | 0.0897 | 9.68 | 994.7 | 1507 | -- | -- |
| 187.2 | 0.642 | 2.8 | -0.0738 | 0.0331 | -0.134 | 0.0751 | -- | 0.0739 | 13.2 | 994.7 | 1507 | -- | -- |
| 172.07 | 0.611 | 3.57 | -4.73 | 0.0825 | 40.7 | -- | -237 | 0.0901 | 9.87 | 994.6 | 1511 | -- | -- |
| 172.17 | 0.611 | 2.8 | -0.109 | 0.0405 | 2.03 | -- | -- | 0.104 | 13 | 994.5 | 473 | -- | -- |
| 172.48 | 0.612 | 3.57 | -4.72 | -- | 40.5 | -- | -236 | 0.0888 | -- | 994.7 | 1505 | -- | -- |
| 187.21 | 0.641 | 2.8 | -0.0745 | 0.0323 | -- | 0.0729 | -- | 0.0742 | 13.1 | -- | -- | -- | -- |
| 187.24 | 0.641 | 2.8 | -0.0719 | 0.0322 | -- | -- | -- | 0.0746 | 13 | -- | -- | -- | -- |
| 172.3 | 0.611 | 2.8 | -0.114 | -- | 2.06 | -- | -- | 0.0916 | -- | 994.7 | 473 | -- | -- |
| 172.26 | 0.611 | 2.79 | -- | 0.0801 | 2.08 | -- | -- | 0.102 | 10 | 994.7 | 473 | -- | -- |
| 187.3 | 0.639 | 2.8 | -0.0731 | -- | -- | -- | -- | 0.074 | -- | -- | -- | -- | -- |
| 187.37 | 0.64 | 2.8 | -- | 0.0334 | -- | -- | -- | 0.0826 | 13.1 | -- | -- | -- | -- |
| 172.64 | 0.612 | 2.79 | -- | -- | 2.07 | -- | -- | 0.104 | -- | 994.7 | 472 | -- | -- |
| 187.44 | 0.639 | 2.8 | -- | -- | -- | -- | -- | 0.0821 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 168.91 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 2 | 169.05 | temperature | 30.0 | 10 | > th | dose independent | rect. | 12 | 1 |
| 5 | 169.24 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 7 | 169.40 | humidity | 70.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 8 | 169.48 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 11 | 169.71 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 18 | 170.12 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 20 | 170.17 | radiation | 20.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 21 | 170.30 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 15 | 22 |
| 23 | 170.48 | wind | 9.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 29 | 170.76 | humidity | 60.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 32 | 170.84 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 33 | 170.94 | wind | 1.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 36 | 170.94 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 37 | 170.95 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 39 | 170.98 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 41 | 170.98 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 44 | 170.98 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 1 |
| 45 | 170.98 | temperature | 10.0 | 30 | > th | dose independent | rect. | 13 | 23 |
| 46 | 170.98 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 1 |
| 47 | 170.99 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 49 | 171.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 53 | 171.15 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 56 | 171.15 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 14 | 23 |
| 59 | 171.17 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 18 |
| 62 | 171.28 | radiation | 40.0 | 30 | > th | dose independent | rect. | 12 | 1 |
| 76 | 171.86 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 78 | 171.89 | atmosphere | 995.0 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 81 | 171.89 | atmosphere | 995.0 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 86 | 171.93 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 15 | 16 |
| 94 | 172.04 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 96 | 172.05 | wind | 7.0 | 10 | < th | dose independent | rect. | 13 | 23 |
| 97 | 172.05 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 100 | 172.10 | wind | 1.0 | 30 | > th | dose dependent | rect. | 12 | 1 |
| 212 | 172.59 | atmosphere | 995.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 241 | 172.63 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 2 | 22 |
| 243 | 172.64 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 294 | 172.67 | atmosphere | 995.0 | 1440 | < th | dose dependent | no | NA | NA |
| 519 | 172.75 | temperature | 30.0 | 30 | < th | dose independent | rect. | 12 | 1 |
| 744 | 172.85 | atmosphere | 995.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 916 | 173.09 | atmosphere | 995.0 | 1440 | < th | dose independent | sin | 15 | NA |
| 921 | 173.09 | atmosphere | 1000.0 | 10 | < th | dose dependent | rect. | 17 | 7 |
| 932 | 173.13 | atmosphere | 995.0 | 1440 | < th | dose independent | no | NA | NA |