BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0437800 Os07g0437800|Os07g0437800
(592 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48050.1 | chr5:19472661-19473770 REVERSE LENGTH=370 110 2e-24
AT1G34070.1 | chr1:12402283-12403209 FORWARD LENGTH=309 106 3e-23
>AT5G48050.1 | chr5:19472661-19473770 REVERSE LENGTH=370
Length = 369
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 24/197 (12%)
Query: 146 DETVSTLHGQAVSVLNVKALVPITLDLAAGNYTRWRGLF------LVVLGKLDADGLRRP 199
D T+S+ + ++ ++ ++A + +TLDL NY WR LF VLG +D P
Sbjct: 3 DTTLSS-YEKSFGIMQIRAYIFVTLDLNKLNYDVWRELFETLCLSFGVLGHIDGSSTPTP 61
Query: 200 RLALRMIPAD--------------LLQEVMSATATAYSVWRDLAHQFLGNQERHAINLNA 245
R D LL ++ TA +W L + F N+E A+
Sbjct: 62 MTEKRWKERDGLVKMWIYGTITDSLLDTIIKVGCTARDLWLSLENLFRDNKEARALQFEN 121
Query: 246 EFRTFAQGDLSISDYCQRLKLMADML---GEPVHDRSLVLQLLTGLSPKFGHVQSLLSMQ 302
E RT DLS+ +YCQ+LK ++D+L P+ DR LV+ LL GL+ K+ ++ +++ +
Sbjct: 122 ELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISDRVLVMHLLNGLTEKYDYILNVIKHK 181
Query: 303 KLFPSFLDARSQLLLEE 319
FPSF +ARS LL+EE
Sbjct: 182 SPFPSFTEARSMLLMEE 198
>AT1G34070.1 | chr1:12402283-12403209 FORWARD LENGTH=309
Length = 308
Score = 106 bits (265), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 111/210 (52%), Gaps = 26/210 (12%)
Query: 155 QAVSVLNVKALVPITLDLAAGNYTRWRGLFLV------VLGKLDA--------------- 193
Q V N+K+ +P+ LD+ NY WR LFL V+G +D
Sbjct: 9 QIYGVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPTNANDVNWQKR 68
Query: 194 DGLRRPRLALRMIPADLLQEVMSATATAYSVWRDLAHQFLGNQERHAINLNAEFRTFAQG 253
DG+ + L + P Q ++T+ +W + +QF N++ A+ L++E RT G
Sbjct: 69 DGIVKLSLYGTLTPKQF-QGSFVTSSTSRDIWLRIKNQFRNNKDARALRLDSELRTKDIG 127
Query: 254 DLSISDYCQRLKLMADMLGE---PVHDRSLVLQLLTGLSPKFGHVQSLLSMQKLFPSFLD 310
D+ ++DY +++K +AD L PV DR+LV+ +L GL+PKF ++ +++ ++ FPSF D
Sbjct: 128 DMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDD 187
Query: 311 ARSQLLLEEITKGSKSAEPATAFVVSNSGS 340
A + +L EE + ++ +P V +S S
Sbjct: 188 A-ATMLQEEEDRLKRAIKPNPTHVDHSSSS 216
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.133 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,546,671
Number of extensions: 460774
Number of successful extensions: 1122
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1118
Number of HSP's successfully gapped: 2
Length of query: 592
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 488
Effective length of database: 8,255,305
Effective search space: 4028588840
Effective search space used: 4028588840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)