Os07g0435300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Photosystem I reaction centre subunit IV/PsaE family protein.
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Os07g0435300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Photosystem I reaction centre subunit IV/PsaE family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.17 | 0.329 | 16.5 | -1.51 | 0.479 | -0.768 | 0.267 | -0.75 | -0.683 | 17.5 | 21.2 | 916 | -- | -- |
| 49.75 | 0.328 | 16.5 | -1.59 | 0.466 | -0.619 | 0.519 | -- | -0.728 | 17.8 | 22.09 | 942 | -- | -- |
| 49.3 | 0.327 | 16.5 | -1.51 | 0.479 | -0.78 | -- | -0.77 | -0.683 | 17.2 | 21.15 | 909 | -- | -- |
| 50.09 | 0.33 | 16.5 | -1.64 | 0.494 | -0.656 | -- | -- | -0.744 | 17.3 | 22 | 963 | -- | -- |
| 60.53 | 0.362 | 16.5 | -1.47 | -- | -0.744 | -- | -0.821 | -0.683 | -- | 21.5 | 808 | -- | -- |
| 65.74 | 0.38 | 16.5 | -1.4 | 0.5 | -- | 0.8 | -- | -0.536 | 18.7 | -- | -- | -- | -- |
| 67.08 | 0.384 | 16.5 | -1.41 | 0.51 | -- | -- | -- | -0.533 | 18.2 | -- | -- | -- | -- |
| 62 | 0.367 | 16.5 | -1.64 | -- | -0.651 | -- | -- | -0.752 | -- | 22.1 | 816 | -- | -- |
| 114.78 | 0.499 | 16.5 | -- | 0.511 | -0.324 | -- | -- | -0.486 | 17.5 | 22.4 | 916 | -- | -- |
| 80.55 | 0.419 | 16.5 | -1.42 | -- | -- | -- | -- | -0.544 | -- | -- | -- | -- | -- |
| 119.53 | 0.511 | 16.4 | -- | 0.53 | -- | -- | -- | -0.376 | 18 | -- | -- | -- | -- |
| 120.61 | 0.512 | 16.4 | -- | -- | -0.508 | -- | -- | -0.449 | -- | 28.2 | 359 | -- | -- |
| 134.11 | 0.541 | 16.4 | -- | -- | -- | -- | -- | -0.386 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.49 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 2 | 45.69 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 4 | 45.97 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 7 | 46.03 | temperature | 15.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 9 | 46.05 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 10 | 46.06 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 72 | 47.13 | temperature | 30.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 80 | 47.19 | temperature | 20.0 | 720 | < th | dose independent | rect. | 3 | 4 |
| 82 | 47.20 | temperature | 20.0 | 720 | > th | dose independent | sin | 5 | NA |
| 84 | 47.20 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 15 |
| 95 | 47.30 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 2 |
| 129 | 47.48 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 150 | 47.65 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 158 | 47.71 | temperature | 20.0 | 720 | > th | dose independent | rect. | 1 | 16 |
| 171 | 47.77 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 14 |
| 183 | 47.85 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 10 |
| 194 | 47.91 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 208 | 47.98 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 12 |
| 368 | 48.67 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 418 | 48.89 | temperature | 20.0 | 720 | < th | dose independent | rect. | 2 | 18 |
| 673 | 49.82 | temperature | 20.0 | 720 | < th | dose independent | sin | 4 | NA |
| 732 | 50.01 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 21 |
| 820 | 50.28 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 898 | 50.49 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 956 | 50.60 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 16 |