BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os07g0435300 Os07g0435300|J075097K22
         (103 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20260.1  | chr2:8736780-8737644 FORWARD LENGTH=146            117   2e-27
AT4G28750.1  | chr4:14202951-14203888 REVERSE LENGTH=144          106   2e-24

>AT2G20260.1 | chr2:8736780-8737644 FORWARD LENGTH=146
          Length = 145

 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/64 (82%), Positives = 58/64 (90%)

Query: 40  IGPKRGTKVKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEI 99
           IGPKRG+KVKILR+ESYWY   GSVV VDQDP TRYPVVVRFAKVNYA +STNNYALDE+
Sbjct: 82  IGPKRGSKVKILRKESYWYKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEV 141

Query: 100 QEVK 103
           +EVK
Sbjct: 142 EEVK 145



>AT4G28750.1 | chr4:14202951-14203888 REVERSE LENGTH=144
          Length = 143

 Score =  106 bits (265), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 53/59 (89%)

Query: 44  RGTKVKILRRESYWYNGTGSVVTVDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEIQEV 102
           RG+KVKILRRESYW+   GSVV VDQDP TRYPVVVRFAKVNYA +STNNYALDE++EV
Sbjct: 83  RGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAKVNYANISTNNYALDEVEEV 141



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.136    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,712,692
Number of extensions: 49007
Number of successful extensions: 74
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 103
Length of database: 11,106,569
Length adjustment: 73
Effective length of query: 30
Effective length of database: 9,105,201
Effective search space: 273156030
Effective search space used: 273156030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)